Christiangramia fulva: C7S20_05870
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Entry
C7S20_05870 CDS
T05367
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
grs
Christiangramia fulva
Pathway
grs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7S20_05870 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grs03019
]
C7S20_05870 (rnr)
03016 Transfer RNA biogenesis [BR:
grs03016
]
C7S20_05870 (rnr)
Enzymes [BR:
grs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C7S20_05870 (rnr)
Messenger RNA biogenesis [BR:
grs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7S20_05870 (rnr)
Transfer RNA biogenesis [BR:
grs03016
]
Prokaryotic type
tRNA degradation factors
C7S20_05870 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AVR44831
UniProt:
A0A2R3Z3J4
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All DBs
Position
1278901..1281102
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AA seq
733 aa
AA seq
DB search
MNKKKKKNKNQFQGDLSRSIIDILRKNSGKAYNYKQIAAALDVNDASSRNQIIKKLSQLA
AKKQIKEVDRGKFVIEGRNDYYEGVLDLTTKGYGYVMVEELADDIFIANKDLNTAFDGDT
VEIYVYNRRRSKRSEGEITKILKRKRTEFVGTLQLKKDFGFVVVDDNSMYTDFFVSGRNM
KDAKDGDKVVVEFDEWPEKADSPFGKIIRVLGTPGEHQTEIHSILAQYGLPHEFPEEVEE
FADKIDTSINEKEIKKRRDMRDVLTFTIDPKDAKDFDDALSFRKLENGNYEIGIHIADVS
HYLQTGTILDDEAFERATSVYLVDRVVPMLPEILSNNACSLRPEEEKLTFSAVFEIDDNA
HVKKEWFGRTVTYSDERFAYEEAQHIIETGTGTIPDDVSIRKHAYTVKGALVEAVITLNR
LAKKMRSRRMRAGAISFDKVEVKFNLNEENNPTGVFFKTAKDSNKLIEEFMLLANQKVAQ
FIGKQKPKKTFVYRCHDEPNEEKLAALQNIVGRFGHSLNLRDRKSTTSSLNKLLEDVQGR
KEQNMVDTLTIRSMSKAYYSTENIGHYGLAFDFYTHFTSPIRRYPDVMVHRLLQHYLEKK
GDVNEEEYEDKCHHSSEMENLASNAERDSIKYMQVKFMQDHENEEFLGVISGVTEWGIFV
EIVENKCEGMIRLRDIRDDHYEYDPEEFAVTGKKTGKTYTLGDEVYVKVKNADLVKRHLD
FTLLGNREEMENR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaaaaagaagaagaataaaaatcagttccagggtgatctttccaggagcatt
atagacatacttcgcaaaaattcagggaaagcctataattataagcaaatcgcagcagct
ctggatgtaaatgatgccagcagccgtaatcaaattataaaaaagctttcccagttagcg
gcaaaaaaacaaattaaagaagtagatcgcggcaaattcgtaattgaaggcagaaatgat
tattacgaaggtgttctggatcttaccaccaaaggctatggttatgtaatggtggaagaa
cttgccgacgatatttttattgccaacaaagatcttaatacggcttttgacggtgatacc
gtagaaatatatgtttataaccgcaggagaagcaaaagatctgaaggagaaataactaaa
attttaaaaagaaaacgtactgaattcgtgggtacgcttcagttaaaaaaagattttggt
tttgtagtggtcgacgataattccatgtacaccgattttttcgtttccgggaggaatatg
aaagatgctaaagatggagataaagtggttgtagaatttgatgaatggcctgaaaaagct
gattcacctttcggaaaaatcatccgtgtactcggaactcccggtgaacatcaaactgaa
atccattcgattcttgctcaatatggtttaccgcacgaatttccggaagaggtagaagaa
tttgcagataagatcgatacttccataaatgaaaaagagataaaaaaacgtcgggatatg
cgggatgtactcacatttaccatagatcccaaagacgcgaaagattttgatgatgcccta
agcttcagaaagctggaaaatggaaattatgaaattggtattcacattgccgatgtttcg
cattacctgcaaacaggtaccatacttgacgatgaggcttttgaaagagcaacttcggtt
taccttgttgaccgcgtcgttcccatgcttcctgaaattctttctaataatgcctgttct
ttaaggcctgaagaagaaaaattgactttttcagcagtttttgaaattgatgataatgcc
catgttaaaaaggaatggtttggaagaacggtaacttattctgatgaaagattcgcttat
gaagaagcccagcatattatcgaaaccggtacgggaaccattcctgatgatgtttccata
agaaaacatgcttatacggtgaaaggagcgcttgtcgaggctgtaattaccctcaatcgt
cttgcaaagaaaatgcgttccaggagaatgcgcgcaggcgctatttcgtttgataaagtg
gaagtgaaatttaacctgaacgaagagaataacccaaccggggttttctttaaaacggct
aaagattcaaataaacttattgaagaattcatgctgcttgccaatcaaaaagtagcacaa
ttcataggaaaacaaaaacctaaaaaaactttcgtttatcgttgtcatgatgagccgaac
gaggaaaaacttgctgctttacagaatattgtgggcagatttggccattcgttgaatctt
cgtgaccgaaaatcgactaccagttctttaaataaacttcttgaagatgtgcagggaaga
aaagaacagaatatggtagatacgcttacaatacgttctatgagcaaagcctattacagc
accgagaatattggtcattacggccttgctttcgatttttacactcattttacttcaccc
atcaggagatatccagacgtaatggtacaccgtcttcttcagcattatttggagaaaaaa
ggcgatgtgaatgaagaagaatatgaagataaatgccatcatagcagtgaaatggaaaat
ttagcttccaatgccgagagggattccattaaatatatgcaggtgaaattcatgcaggat
catgaaaatgaggaatttctcggagttatttcaggagttaccgaatggggaatttttgta
gagatcgttgaaaataagtgtgaagggatgataaggctgcgggatataagagatgatcat
tatgaatatgatcctgaagaatttgccgtgacaggtaaaaaaaccgggaaaacttatacc
ctaggagatgaagtatatgtaaaagttaaaaatgccgatctggtaaaaagacatcttgat
tttaccctgcttggcaatagggaggaaatggaaaatagatag
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