Geotrypetes seraphini (Gaboon caecilian): 117358814
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Entry
117358814 CDS
T09159
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117358814 (COL13A1)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117358814 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117358814
NCBI-ProteinID:
XP_033796411
UniProt:
A0A6P8RAV7
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Position
4:184378476..185025379
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AA seq
734 aa
AA seq
DB search
MEEEKGCKDAGPGALWRGCGTALGTKAGERCRGCPGLLSFGFVVVALLSLALSLLGHVRT
SNLQSRVSHLEEERYIQLSALLSADQMETAILGRVDQLLEEKLKAHLPKLRQSRDAPQKC
SCPPGPPGAKGKRGHNGDPGLPGPIGRPGLPGEKGGLGIPGRMGQKGQPGEKGVPGEPGM
SIIGPRGPPGQPGTRGFPGFPGPIGLDGKQGHTGQKGEKGDMGPSGTKGQPGSSGPKGEK
GHCGDYTHRLLPLLNAVRVAQPSVIKRRIYQGEQGQTGIQGPPGLPGPPGPLGPPGNPGE
PGQIGPPGKAGEPGTPGKDGMSLPGYPGPKGERGMPGLPGKRGSKGEPGAPGIKGDKGES
GNALGGFKGDPGPPGLPGPPGPKGETGDIGQTGIPGLQGEKGQPGAAGEQGPPGPRGPKG
ETGKMEVTEYNENINEALQEIQTLARMGPPGLPGPAGPPGLTGQKGEIGLPGPPGHDGEK
GPRGKPGELGPSGPQGPPGKDGLSGSKGEPGLTGLLGLKGDKGDEGQMGLPGLDGPSGEK
GEQGGQGTPGTVGLPGPLGPPGLKGEKGNSGEKGDLGDSLPGPAGPPGSDGVPGPVGPPG
LPGPKGEAGVDGVEGEKGSMGDKGDRGPLGLPGASGFDGRPGPPGTPGPIGVPGPAGPKG
ERGSKGDPGFAGPMGPPGHPGLHGPPGEKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCP
LGDDGLPVQGCWNK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaaaagggctgtaaagatgctggccctggtgccttatggagggggtgtgga
actgccctcgggacaaaggctggagagaggtgcagagggtgccctggactgctgagcttt
gggtttgtggtggtggctctgctttctctggctctcagcctcttgggccacgttaggact
tcgaacctacagtccagggtttcgcatttggaagaggaaagatacattcagctctctgct
ttgctctcagccgaccaaatggagacagctattttgggaagagttgaccaactgctagaa
gagaaattgaaggcccatttaccaaaactgcgacaatctcgagatgccccgcagaaatgc
agctgtccaccaggaccacccggtgcaaagggcaagagaggacacaatggggatccaggg
ctgcctggcccaattggaagaccaggccttccgggagaaaaaggtggccttgggatccca
ggacggatgggacaaaaggggcagcctggtgagaagggagttccaggagaacctggcatg
tctatcataggaccccgtgggcctcctggtcagcctggaactagaggatttcctggattt
ccgggcccaattggattagacggcaaacaaggtcacactggacagaagggtgagaaagga
gatatgggtccttctggcacaaaagggcagcctggatcttcaggaccgaagggagaaaag
ggtcattgtggggattacacgcacaggctgttgcctctcctcaatgcagtacgggtagct
cagccctccgttataaaaaggcgcatctaccagggtgaacaggggcagactggtatccag
ggtccaccagggctacctggccctccaggaccattgggacccccaggaaatccaggagag
cctggtcagatcgggccacctggtaaagcaggagagccgggtacacctggcaaggatgga
atgagtttacctggatatcctggaccaaagggggagaggggcatgccagggctaccagga
aaacgtggctctaagggtgaaccaggggctccaggaataaagggagataaaggagaatct
ggcaatgcacttggtggatttaaaggggatcctggccctccagggctccctgggccccca
ggaccaaagggggaaactggcgatattggccagactggaattccaggactgcagggagaa
aagggacagcccggagcagctggagaacagggtccccctgggccaaggggtccaaaggga
gagacagggaagatggaagtgacagagtataatgaaaacatcaatgaggccctgcaggaa
atccaaacattagcccgcatgggaccgcctggacttccggggcctgcaggaccaccagga
ctaactggacagaagggtgaaatcggcttgccaggtccacccggccatgatggagagaag
ggccctcgaggtaaaccaggagaattgggaccctctggcccacaagggcctccaggaaaa
gatggactttctgggtcaaaaggagagccagggctcactggactgctaggactgaagggt
gataagggtgatgaaggacaaatgggtttaccgggtcttgatggcccatctggggaaaaa
ggagaacaaggtggccaagggacgccaggaacagtagggcttccgggcccattaggacct
ccaggacttaaaggagaaaaaggaaattctggagaaaaaggagacctaggggactcgttg
cctgggcctgcaggacccccaggatcagatggtgttccaggacctgtgggtcctccaggt
ctcccagggcctaagggagaagcaggagtcgatggagtagaaggagagaagggcagcatg
ggtgacaaaggagaccgaggtccattggggttgcctggtgcttcaggttttgacggaagg
cctggaccaccgggtactccaggaccaattggagttccaggaccagcaggaccaaaagga
gaaaggggtagtaaaggagaccccggatttgcgggaccaatggggccacctggacacccc
ggtttacatggaccacctggtgaaaaaggaaatcgaggggagaggggaaagaaaggctct
agagggcctaaaggggataagggagaccaaggagcgcctggattagatgcaccctgtcca
ttgggtgatgatggcttgccagtgcagggttgctggaataagtga
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