Geobacter sulfurreducens KN400: KN400_0018
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Entry
KN400_0018 CDS
T01940
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gsk
Geobacter sulfurreducens KN400
Pathway
gsk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KN400_0018 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsk03400
]
KN400_0018 (mfd)
Enzymes [BR:
gsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KN400_0018 (mfd)
DNA repair and recombination proteins [BR:
gsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KN400_0018 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADI82881
LinkDB
All DBs
Position
complement(25355..28828)
Genome browser
AA seq
1157 aa
AA seq
DB search
MTQTDTDLFKRLTDRLTPPAARLTLAGLRGSSPAYLLARLIGEAGAPFLVVVPDAEAAAE
LTTELRFFTGRPGDILLFPAWDTSPFEKASPHADVTAQRLAVLRRLADRRAAAVVTTPEA
LRQRVVPRSLLDSASLYFLPGEESDRDDLLSRLVTLGYLNVPLVEDRGTFAVRGGIVDIF
PPGFDLPVRIEFFGDFVDTIRSFEPLSQRSLQPLEELLLLPSRELLLTADTLQGAASRIK
TRCDDLEISPLVRRELLEQLQNGLYPAGVEWLLPLFHQNLETLLDYAGDAVRVLVDPAAQ
EEEGERLSRELEEASDRARERGELFPAPESLFLAPADTAAALAAGRLVTIPFLHLNEGDS
PETIDIATETNADLKVDISPDSEGVLRPLAARLTGWIEERQRVIIACHQRGQAQRLYELL
AHYPVPLTVSDRPFPAERERDDGRVDIVIGEISRGFRLPEGRLVVIAEEEIFGKRQKRRG
ITELRKKQIMTSLAELKPGDHMVHLDHGVGIYRGLQHLSLSGCAGDFLLLEYAGGDKLYL
PVDRLSLVQRYVGSEGIEPRVDRLGGTSWEKAKGKARAAVQEMAEELLRIYAARQLHEGH
RFSPPDDLYREFEASFAYEETSDQLAAIEDVIADMTSNRPMDRLVCGDVGYGKTEVAMRG
AFKAVMDGKQVAVLVPTTVLAQQHLETFRARLGAYPVTIEMVSRFRTPKEQKDILERVKK
GTVDVIIGTHRLLQNDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAAVDILTLTATPIPR
TLYMSLMGIRDLSIIDTPPVDRLAVKTFVARTSDELIREAVLRELRRGGQVFFVHNRVQS
IGAWYEHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPSAN
TLIVDRADTFGLAQLYQLRGRVGRSRQRAYAYLLIPGEGAISSDARERLRIIQELNELGA
GFRLATHDLEIRGAGDLLGAKQSGNIAAVGFDLYTELLEEAVQKLKGEEPVERVEPEINL
RVPAFIPEDYVREPNQRLVIYKKLTQATAEEEVGEVMEELVDRFGTLPLAASYLLDVMKL
RIMLKHFLVRMAEFDGKRLCLSFHEKTPVSPDTIIGLIKANPKRYQFTPDFRLVAELADT
SFEGVLAEARNLLKRLG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgacacagaccgataccgatctcttcaaacgcctcaccgaccgcctcaccccccctgcc
gcccggctcacccttgccgggctcagggggtcgtcgccagcctatctgctggcccggctc
atcggggaggcgggagctccattcctcgtggtcgtccccgacgccgaagccgccgccgag
ctcaccacggaactccggttcttcacgggaagacccggcgacatcctcctgtttcccgcc
tgggacacctcgccctttgaaaaggcatcgccccatgccgacgtgacggcccagcggctg
gcagtcctgcgccggctggcggaccgcagggcggctgccgtggtaaccacgccggaggct
ctgcgccaacgggtagtgccgcgctcccttctggacagtgcctcactctactttctgccc
ggcgaagagagcgaccgggacgatctcctgtcacggctggtgaccctcggctacctcaac
gtgccgctggtggaggaccggggaacctttgccgtgcggggcggcatcgtcgacatcttc
ccgccgggtttcgatctgccggtgcggatcgaattcttcggcgacttcgtcgataccatc
cggagcttcgaaccgctctcccagcgctccctccagcccctggaagagttactgctgctc
ccgtcgcgggagttgctcctgactgccgataccctgcagggggcggcgtcccgcatcaag
acgcgctgcgacgatctggagatatcccccttggtccgccgcgagctgctggaacagctc
cagaacggcctctacccggcaggagtcgaatggctccttcccctctttcaccagaatctg
gagaccctgcttgactacgccggcgacgccgtgcgggtcctggtcgatccggcagcccag
gaagaggagggagaacgactctcgcgggaactggaggaggcttccgaccgcgcccgggag
cggggcgagctctttcccgcgccggaaagcctcttcctcgccccggcggatactgcggcc
gccctggctgcggggagactggtgaccatccccttcctgcacctgaacgagggtgattcc
ccggagaccatcgacattgccaccgagacgaacgccgacctcaaggtggacatctcgccc
gacagcgagggggtcctgcggccgctggccgctcgcctgaccggctggatcgaggagcgg
caacgggtgatcatagcctgccaccagcgcggtcaggcccagcggctgtatgagttactg
gcccattacccggtcccccttaccgtctcggaccgccccttcccggcggaacgggagcgg
gacgacggcagggtggacatcgtaatcggcgaaatctctcgcgggttcaggttgccggaa
ggacggctcgtggtcatcgccgaagaggaaatcttcggcaagcggcaaaaacggcgcggc
atcaccgagttgcgcaaaaagcagatcatgacctccctggcggagctgaagccgggcgat
cacatggttcacctggaccacggggtcggcatttaccgtggactccagcacctttcgctc
agcggctgtgccggcgacttcctgctgctggagtatgcggggggggacaagctctacctg
ccggtggaccggctcagcctggtgcagcgctacgtgggctccgaggggatcgaaccgcgg
gtcgaccggctcggcggcacctcatgggagaaggccaagggcaaggcccgcgcggcagtc
caggagatggccgaagaactcttgcggatctacgcggcccgccaacttcacgaggggcac
cggttttccccccccgacgatctctaccgggagttcgaggcctccttcgcctacgaggag
acctccgaccagctggctgccatcgaagacgtcatcgccgacatgaccagcaaccggccc
atggaccggctggtctgcggcgacgtgggctacggcaagaccgaagtggccatgcgggga
gctttcaaggcggtcatggacggcaagcaggtggcggtcctggtgccgaccacagtcctg
gcccagcagcatttggagaccttcagggcgcggcttggggcctacccggtcaccattgaa
atggtttcccgcttcaggactcccaaggaacagaaggacatcctggagcgggtgaaaaag
gggaccgtcgatgtcatcatcggcacccaccgactccttcaaaacgatgtgacgttcaag
gacctggggcttctcatcgtggacgaggagcagcgcttcggggtaacccacaaggaaaag
ctgaaaaagtacaaggcagcggtggacatcctgaccctcaccgccacccccattccccgc
actctctacatgtcgctcatgggtatccgcgacctctccatcatcgacaccccgcccgtg
gatcggctggcagttaagaccttcgtggcccgtacctccgacgagctcatccgcgaagcg
gttctgcgggagctccgaaggggagggcaggtgttcttcgtccacaatcgggtccagtcc
atcggagcctggtacgaacacctgcgccgcatcgtgcccgaggcaaagatcgccgtgggg
cacggccagatggacgaaggcgagctggagaaggtgatgcttggcttcatgcacggggaa
acgaaccttctgctctgcaccacgatcatcgagtcaggcctggacatccccagtgccaac
accctcatcgtggaccgggctgacaccttcggactggcccagctttaccagttgcgggga
agggtagggcgctcccggcagcgggcctacgcctatctcctcatacccggcgaaggcgcc
atctcgtccgatgcccgggagcggctgcggatcatccaagaactgaacgagctgggggcc
ggcttccgcctggccacccacgacctggagatcaggggcgccggcgatctcctgggggcc
aagcagtcgggcaacattgccgccgtcggcttcgacctctacacagaactcctagaagag
gcggtccagaaactcaagggcgaggagccggtagagcgggtggagccggagatcaacctg
cgggtgccggccttcatccccgaggactatgtgcgcgaaccgaatcagcgcctcgtcatc
tacaagaagctgacccaggccacggccgaagaggaggtgggcgaggtcatggaagaactg
gtggaccggttcggcacgctgccgctggcggcctcctacctgctggacgtgatgaagctg
cggatcatgctcaagcacttcctggtccggatggcggagtttgacggcaaacggctctgt
ctctcatttcacgagaaaactccggtttcgcccgacaccattatcggtctcattaaagca
aacccaaaacggtaccagttcaccccggacttccgtctcgtggcggaactggccgacacc
agcttcgagggggtcctggccgaagccagaaatctcttgaaaaggctggggtga
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