Gardnerella swidsinskii: K9E37_06150
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Entry
K9E37_06150 CDS
T08402
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
gsw
Gardnerella swidsinskii
Pathway
gsw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9E37_06150 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsw03400
]
K9E37_06150 (uvrB)
DNA repair and recombination proteins [BR:
gsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K9E37_06150 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K9E37_06150 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_22
AAA_16
UvrD-helicase
UB2H
AAA_5
AAA_28
HEM4
AAA_7
nSTAND3
DUF87
Pox_A_type_inc
Motif
Other DBs
NCBI-ProteinID:
UQA88548
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Position
1522149..1524263
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AA seq
704 aa
AA seq
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MSNKIQRTNKPFVVKAPYKPSGDQPQAIDELVNRIENGENDVVLMGATGTGKTATTAWLI
ERLQRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDS
NINDDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAERMLMLSVGEQLERDDLL
RQFVSMQYKRNDIAFTRGTFRVRGDTVEIIPVYEELAVRIEFFGDEIDRITMLHPLTGEV
IRQESSVHIFPASHYIAGPERMERALEAIEKERDERVAQLKKQNKLLEAQRLEMRTTYDL
EMLRQVGVCPGVENYSRHFDGRDAGTPPHTLLDFFPDDFLLVLDESHVTVPQIGAMYEGD
ASRKRTLVEHGFRLPSAMDNRPLKWKEFLEHVGQTVYLSATPGDYELGLSDGVVEQIIRP
TGLLDPKIEVRPVEGQVDDLLAEIKERVAKDERVLVTTLTKKMAEDLTDYFLELGIKVEY
LHSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSL
IQTIGRAARNVSGTVLMYADTVTDAMSKAISETERRREKQIAYNKAHGIDPKPLRKKISD
VNDMLAKEDVDTQTLLAGGYRNANKAGNSHYGVPKEPNLGQQSKEKRMANVSELPQDDIM
SLIKNLSEQMHVAAEQLQFELAARLRDEIRDLKKELRQISDAQS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaataaaattcagcgcacaaacaagccttttgtagtaaaagcaccatacaagcct
tcaggagatcaaccgcaagcaatcgacgagctggttaatcgcattgaaaacggcgaaaac
gacgttgttttaatgggtgctacaggaactggtaaaaccgctacaaccgcttggcttatt
gagcgtttgcaaaggcctacccttattattgagccgaataaaactttggcagctcagctt
tgcgcagagtttcgtgagcttatgccagataatgctgtgagctattttgtgtcttactac
gattactaccagccagaagcgtatattccgcaaacagacacgtatattgaaaaagactcg
aatattaacgacgatgttgagcgtcttcgtcacgcagctacagcaaatttacttactcga
cgggattgcgttgttgtggctactgtttcttgcatttacggccttggtactccagaggag
tatgccgagcgaatgcttatgctaagcgttggtgagcagcttgagcgagacgatttatta
cgccaatttgtgagcatgcaatacaagcgcaatgacattgcgtttacgcgcggaactttt
agagtgcgcggtgacacggttgagattattccagtgtacgaagaattagctgtgcgaatt
gagttcttcggtgacgaaatcgacagaattactatgttacatcctcttacaggagaagta
attcgccaggagagtagcgttcatattttcccagcatctcactacattgcaggaccggag
cgcatggagcgcgcgttagaggcgattgaaaaagagcgcgacgagagagtagctcagctt
aaaaagcagaacaaattgctggaagctcagcgtttggaaatgcgaactacgtacgatttg
gagatgcttcgccaagttggtgtatgcccaggagtggagaattattctaggcattttgac
ggacgcgatgcaggcacgcctccgcatactctgcttgactttttcccggatgactttttg
ctagttttagacgagtcgcatgtaacagtgccgcaaattggagctatgtatgaaggcgat
gcttcgcgcaaaagaacgcttgtagaacatggctttagactgccatcggcaatggataat
cgaccgttaaagtggaaagaatttttggagcacgttggtcaaactgtgtatctttctgca
acgcctggagattacgagcttgggctttcagatggtgtagttgagcaaattattcgccct
accggcttgcttgaccctaagattgaggttcgccctgtagaaggtcaggttgacgatttg
cttgcggaaatcaaggagcgagtagcaaaagatgagcgcgtgcttgttactacgcttaca
aagaaaatggcggaagacttaactgattacttccttgagcttggtattaaagttgagtac
ttgcattcagatgttgatactttgcgcagagtggagcttttgcgtgagcttcgcgaaggc
aaaattgatgtgattgttggcatcaatttgcttcgtgagggtttggatttgccggaagtc
tcgcttgttgcgattttggatgcagataaggaaggtttcttaagatcctaccgttcgctt
attcaaacgattggccgtgctgctcgtaacgtttctggaactgttcttatgtatgcggat
actgttactgatgctatgagcaaggcgattagcgagacagagcgccgtcgcgaaaagcaa
atcgcgtataacaaggctcatggaattgatcctaagcctttgcgaaagaagattagcgat
gtgaacgatatgctcgctaaagaggatgttgatacgcaaactttgctagcaggcggttac
aggaatgctaataaggctgggaactcgcattatggcgtgccaaaagagccgaatcttggg
cagcaaagcaaagaaaagcgtatggcgaatgtttctgagcttccgcaagacgatattatg
tcgctgattaaaaatttgagtgagcagatgcatgttgctgcagagcagttgcaattcgag
cttgcagcgcgtttgcgcgacgagatacgcgatctaaagaaagagttgcgccaaataagc
gatgctcaaagttag
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