Halomonas alkalicola: B6N23_13105
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Entry
B6N23_13105 CDS
T09267
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
halw
Halomonas alkalicola
Pathway
halw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B6N23_13105 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halw03400
]
B6N23_13105 (recB)
Enzymes [BR:
halw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B6N23_13105 (recB)
DNA repair and recombination proteins [BR:
halw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B6N23_13105 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
DUF892
Motif
Other DBs
NCBI-ProteinID:
WLI72688
LinkDB
All DBs
Position
complement(2756887..2760906)
Genome browser
AA seq
1339 aa
AA seq
DB search
MSTDNQTPANLDPIHLPLTGSRLIEASAGTGKTFTIALLYVRLVLGPRDEADAESFPRAL
TPPEILVVTFTNAATRELRDRIRARLMEAAEAFQSGTDPHSSKAAEESTEGAPGAGHRGG
PMPGMASVAPREGFTAPPQRPVSGKAPSMTGDLFAEPPVDNSEAVDRSHGNTPGGDPLLA
LRDSYPRERWPACARRLQLAAEWMDEAAVSTIHSWCHRMLREHAFESGSLFSLEMNLDQS
ELELEVARDYWRSFYYALDAEALAVVTCYWETPDALAEDVRRLQGDAELLPDAPPPAGAL
ATLQAERTRVLAELKAPWPAWLDELTEQLESAAAAKAFDQRKLNSRSRIDWLAKLRDWAQ
DPELATPALTDAAWKRLTPEGMAEIWKQGEPLDHPALHALVALPEQLEALPSAHADLLAH
AVRWMSERRERVQQRRAELGPDDLLERLDRAFAGPAGGALAEHVRRQFPVALVDEFQDTD
PVQYRLFDHVYRLAEAPDPDNPGAVLLIGDPKQAIYAFRGADIHTYLQARRDTVGRHVTL
GTNFRSSTAMVEAVNRVFRFAETHPAGRGAFLFRSPEGGNPVPFLPVAAKGRKDALTRDG
KPLPAMTLWHLSAQGDDAEKGISKGAYFKEMAARCATRMAELLREGQQGRTGFGAPDEPF
RPLKPSDLAVLVNNGNEAKAIRGALLERGIKSVYLSDKEGVFETPAALELEVWLAACAEP
DSERRLHAALAMPSVGLSLAELDALQHDELAWEARVLQFRGYHRQWQRQGVLPMLHRLLA
DFAVPTRLLRSPSGERHLTDLLHLGELLQQASAELDGEHALLRHLSEARAHPPQQADTHR
LRLESDADLVQVITIHKSKGLEYPLVFLPFICAFREKKATDLPLTWHDAAGRRHLSLEPD
ETVLARADDERLGEDLRKLYVALTRARHATWLGIAPLKGFERSAIGQVLTAGAPLSSPST
DGLLEALFPLAQGAAETELKVEPAPEPNDQMVPSEANDEALREALTPARRAREHWWIASY
SALRLGGERIGDEEAPALLEEPESALSTEPALLEEPESALEATAREMRDEPSDPASAPLP
VSDASLHRFPRGPAAGTFLHGLLEWAGAEGFARLVAEPERLNDTLARRANLRGWRERIPA
LQAWLRGLLACELPVPNAPEGPVSPLRLDRLESAHYQVELEFWFAAHRVDTTRLDALVSA
HTLGGAERPALERDRLNGMLKGFIDLVVEHEGRFYVLDWKSNYLGRDDEAYSEAAMAEAV
REKRYDLQYCLYLLALHRLLKARLPGYDIDRHLGGALYVFLRGQHAPSRGVHHERPPRVL
IEALDALFRDADATPEEQP
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgataaccagacgccagccaacttggacccgatccacctgccgctcaccggc
agccggctgatcgaggccagcgccggcaccggcaagaccttcaccatcgccctgctctac
gtgcgcctggtgctgggcccccgggacgaggccgacgccgagagcttcccccgcgccctc
acccccccggagatcctggtggtgaccttcaccaacgccgccacccgggagctgcgcgac
cgcatccgcgcccggctgatggaggccgccgaggcgtttcaatcggggacagaccctcat
tcaagcaaggctgcagaagaatccaccgaaggggcgcctggggcaggtcatcgcggaggt
cctatgccagggatggcatcggtagcgcccagggaggggttcacagcgcctccgcagaga
cctgtctcagggaaagccccgtccatgacaggggacctcttcgccgaaccaccggtggat
aactcagaggcggtggacaggtcgcacggcaatacgccgggcggcgacccgctgctcgcc
ctgcgagacagctatccccgcgagcgctggccggcctgcgcccgccgcctgcagctcgcc
gccgagtggatggacgaggccgcggtctccaccatccactcctggtgccaccgcatgctg
cgcgagcacgccttcgagagcggcagcctcttctcgctcgagatgaacctcgaccagtcg
gagctcgagctggaggtggcccgggactactggcgcagcttctactacgccctggacgcc
gaggccctcgcggtggtcacctgctactgggagacccccgacgccctggccgaggacgtc
cgccgcctgcagggcgacgccgagctgctgcccgacgcccctccccccgccggggcactg
gccaccctgcaggccgaacgcacccgggtgctcgccgagctcaaggcgccctggcccgcc
tggctggatgagctcaccgaacaactggagagcgccgccgccgccaaggccttcgaccag
cgcaagctcaacagcagaagccgcatcgactggctggcgaagctgcgcgactgggcccag
gacccagagctcgccacccccgcgctcaccgacgccgcctggaagcgcctgacgcccgag
ggcatggccgagatctggaagcagggcgagccgctggaccaccccgccctgcacgccctg
gtcgcgctgcccgaacaactcgaggccctgcccagcgcccacgccgacctgctggctcac
gccgtgcgctggatgagcgaacggcgcgagcgcgtgcagcagcgccgcgccgagctcggc
cccgacgacctgctcgagcgcctcgaccgcgccttcgccggccccgccggcggggcgctg
gccgagcacgtgcgccgccagttcccggtggccctggtggacgagttccaggacaccgac
ccggtgcagtaccggctcttcgaccacgtctaccgcctggccgaggcccccgaccccgac
aaccccggtgccgtcctgctgatcggcgaccccaagcaggcgatctacgccttccgcggc
gcggatatccacacctacctgcaggcgcgccgcgacaccgtcggtcgccatgtgacgctc
ggcaccaacttccgctcctccaccgccatggtggaggcggtcaaccgggtgttccgcttc
gccgagacccaccccgccggccgcggcgccttcctgttccgctcccccgaggggggcaac
cctgtgccttttttaccggtggcagctaaaggcaggaaggatgccctgacccgcgacggc
aagccgctgcccgccatgacgctttggcacctttcggcccagggcgacgatgccgagaag
ggcataagcaagggcgcctacttcaaggagatggccgcgcgctgcgccacccggatggcc
gagcttctgcgcgagggccagcagggccgcaccggcttcggcgcgcccgacgagcccttc
cggcccctgaaaccgtcggatctcgccgtgctggtcaacaacggcaacgaggcgaaggcg
atccgcggtgcgctgctcgaacgcggcatcaagagcgtctacctctccgacaaggagggg
gtcttcgagaccccggcggccctggagctggaggtgtggctggccgcctgcgccgagccc
gacagcgaacggcgcttgcacgccgccctggccatgcccagcgtcgggctatcgctcgcc
gagctcgacgccctgcagcacgacgagctggcctgggaggcgcgcgtgctgcagttccgg
ggctaccaccggcagtggcagcgccagggcgtgctgcccatgctgcaccggctgctggcc
gacttcgccgtgcccacccggctgctcaggagcccgagtggcgagcggcatctcaccgat
ctgctgcatctcggcgagctgctccagcaggccagcgccgagctcgacggcgagcacgcc
ctgctgcgccacctgagcgaggcccgcgcccatccaccccagcaggccgatacgcaccgc
ctgcgcctggagagcgatgccgacctggtacaggtgatcaccatccacaagtccaagggg
ctggagtacccgctggtcttcctgcccttcatctgcgccttccgcgagaagaaggccacc
gacctgccgctcacctggcacgacgcggcgggccgacgccacctctcgctggaacccgac
gagaccgtgctagcccgcgccgacgacgagcgcctgggtgaggacctgcgcaagctctac
gtggccctgacccgcgcccgccacgccacctggctgggcatcgccccgctcaaggggttc
gagcgcagcgccatcggccaggtgctcaccgccggggcaccgctctcgtcaccctcgacg
gacggcctgctcgaggccctcttccccctcgcccagggcgcggcggagacggagctcaag
gtcgagccggcgccggagccgaatgaccagatggtgcccagcgaggcgaacgacgaggcc
ctgcgcgaggcgctcactccggcgcgccgcgcccgggagcactggtggatcgccagctac
tcggcgctgcgcctgggcggagagcgcattggtgatgaagaagcacccgcccttctggaa
gaacccgaaagcgctctctccacagagcccgcccttctggaagaacctgaaagcgctctc
gaagccaccgcccgggagatgcgtgacgagcccagtgacccggccagcgcgccgctgccg
gtgagtgatgcctcgcttcaccgcttcccccgggggccggcggcgggcaccttcctgcac
ggcctgctggagtgggccggcgccgagggcttcgcccggctggtcgcggagcccgagcgg
ctgaacgacaccctggcgcggcgcgccaacctgcgcggctggcgcgagcgcatcccggcg
ctgcaggcctggctgcgggggctgctggcctgcgagctgccagtgccgaacgcccccgag
gggccggtgtcgccgctgcggctggaccggttggagagcgctcactatcaggtggagctg
gagttctggtttgccgcccaccgggtcgacaccacccgactggacgccctcgtaagcgct
cacacactgggcggcgccgagcgcccggcgctggagcgcgaccggctcaacggcatgctc
aagggcttcatcgacctggtggtggagcacgaggggcgcttctacgtgctggactggaag
tccaactacctgggccgcgacgacgaggcctactcagaggcggccatggcggaggcggtg
cgcgagaagcgctatgacctgcagtactgcctctacctgctggccctgcaccgcctgctg
aaggcgcggctgcccggctacgacatcgaccgccatctgggtggggcgctctacgtcttc
ctgcgtggccagcacgccccctcccgcggcgtgcaccacgagcgcccgccccgggtgctg
atcgaagcactcgacgccctgttccgcgatgccgatgccaccccggaggagcagccatga
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