Halomonas alkalicola: B6N23_16610
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Entry
B6N23_16610 CDS
T09267
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
halw
Halomonas alkalicola
Pathway
halw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B6N23_16610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
halw03400
]
B6N23_16610 (mfd)
Enzymes [BR:
halw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B6N23_16610 (mfd)
DNA repair and recombination proteins [BR:
halw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B6N23_16610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
Glyco_tran_WecG
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WLI74995
LinkDB
All DBs
Position
complement(3531097..3534546)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPNFSPLDPPRPEGMRDTLYWQAPQGSASALALTRLAQDAPLLVITADTAQALRLESELA
FYGRRPVLPFPDWETLPYDSFSPHQDIVSARLRTLRRLQDGEHGIVLVPINTLMQRLPPV
EYIAGRVLTLEVGQRLDRERFREALSRAGYRAVETVFEPGEYALRGAIIDLFPMGTEAPL
RIDLFDDEIDTLRRFDPDTQRSQDKAERVDLLPAHEYSLSRSAIACFREGFETLFDVDPR
QCPLYVDALKGIPSPGLEQYLPLFFEQTATLFEHLAEGTRVALLPGVHAAAERHWAAIES
RFENLGVDPTRPLLPPHRAFVPVAEVFGAIKRHPRVALTEEADHRHALVPASQAPPEVGI
NARAREPLAALSSFLAQHASSRVLFVAESRGRREALEEALAPLHLALPHVDDFADFLAGE
AAMAITEGQLEAGLWLTEPDLAVISESELYGEVVRQSRRREKATDADELAIRHLSELRPG
APVVHQSHGVGRYKGLETLEAGGQAAEFVTLEYAEGARLYVPVGSLHLISRYAGADDELA
PLHRLGSDQWEKARKKAAEKIRDTAAELLDIYARREAREGFACAAPDTEYARFAAAFPFE
ETPDQRAAIAAVIEDMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVHSGRQVVVLVPTTL
LARQHFENFRDRFADTAVNIELVSRFTAGKGQSASLKRIEEGQADIVIGTHKLLSESMKL
PKMGLLIIDEEHRFGVAQKERLKSLRAEVDILTMTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQRREEPLIKEAILREILRGGQVYFLHNEVKTIETAAERLRELVPEARVGV
AHGQLPERALERVMSDFYHKRFNVLVCSTIIETGIDVPSANTILIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPRAMTKDAIKRLEAIGAAEDLGAGFTLASHDMEIRGAGELLG
EEQSGQMEAIGYGLYMQMLDRAVAAIRAGKTPNIESPLDEGVEVSLNLPALIPDDYLHDV
QQRLVMYKRISSAADEAALKELQVEMIDRFGLLPAPVKTLLRQTKLRQRAEQLGIVKLEA
GPERGRVIFGGHTRVDPLTLVELIQREPNRYRLDGADTLRFEAAMEQEEARFQAVEQLLE
TLNRKAEAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacttctcgccgctggacccgccgcgccctgaaggtatgcgcgacaccctctac
tggcaggctccccagggcagcgccagcgccctggccctgacccgcctggcccaggacgcc
cccctgctggtgatcaccgccgacaccgcccaggccctgcgcctggagagcgagctggcc
ttctacggccgccggccggtgctccccttccccgactgggagacgctgccctacgacagc
ttctcgccccaccaggacatcgtctcggcgcggctgcgcaccctgcgtcggctgcaggac
ggcgagcacggcatcgtgctggtgccgatcaatacgctgatgcagcggctgccgccggtt
gagtacattgccgggcgggtgctcaccctggaggtgggccagcgactcgaccgcgagcgc
ttccgggaagcgctctcccgggccggctaccgggcggtggagaccgtctttgaacccggc
gagtacgccctgcgcggcgccatcatcgacctcttccccatgggcaccgaggcgccgctg
cgcatcgatctgttcgatgatgagatcgacaccctgcgccgcttcgacccggacacccag
cgcagccaggacaaggccgagcgggtcgacctgctgccggcccacgaatactcgctgtcg
cgctccgccatcgcctgcttccgcgaggggttcgagacgctgttcgacgtcgatccgcgc
cagtgtccgctctacgtcgacgccctcaaaggcatcccctccccgggcctcgagcagtac
ctgccgctcttcttcgaacagaccgcgacgctcttcgagcacctggccgagggtacccgg
gtcgccctgctgccgggtgtgcacgccgccgccgagcgccactgggcggccatcgagagc
cgcttcgagaacctcggggtcgaccccactcgtcccctgctccccccccaccgcgccttc
gtcccggtggccgaggtgttcggcgccatcaagcgccaccctcgggtggcgctcaccgag
gaggccgaccatcgccacgccctggtcccggccagccaggccccgcccgaagtgggcatc
aacgcccgggcccgggagcccctggcggcgctgtcgagcttcctggcccagcacgccagc
agccgcgtgctcttcgtggcggagtcccgcgggcggcgtgaggcgctggaggaggccctg
gcaccgctgcacctcgccctgccccacgtcgacgactttgccgacttcctcgccggcgag
gcggccatggcgatcaccgagggccagctcgaggcgggcctgtggctcactgagcccgat
ctcgcggtgatcagcgaatccgagctctatggcgaggtggtccgccagagccggcgccgc
gagaaggccaccgacgccgacgagctggccattcgccacctctcggagctgcgccccggc
gcgccggtggtgcaccagtcccacggcgtgggacgctacaaggggctcgagaccctggaa
gccggcggccaggccgcggagttcgtgaccctggagtacgccgagggggcgcggctctac
gtgccggtggggagcctgcacctgatatcgcgctatgccggcgccgacgacgagttggcc
cccctgcatcgtctcggctccgaccagtgggagaaggccaggaagaaggccgccgagaag
atccgcgacaccgccgccgagctgctcgacatctacgcccgccgggaggcccgggagggc
ttcgcctgcgccgcccccgacaccgagtacgcccgcttcgccgccgccttccccttcgag
gagaccccggaccagcgcgccgccatcgccgcggtgatcgaagacatgaccgccccgcgc
cccatggaccgcgtggtgtgcggcgacgtcggcttcggcaagaccgaagtggccatgcgc
gccgccttcctggcggtccactccggccgccaggtggtggtactggtgcccaccaccctg
ctcgcccgccagcacttcgagaacttccgcgaccgcttcgccgataccgcggtcaatatc
gagctggtgtcgcgcttcaccgccggcaaggggcagtcggcctccctcaagcgcatcgag
gagggccaggcggacatcgtcatcggcacccacaagctgctctcggagtccatgaagctg
ccgaagatggggcttttgatcatcgacgaggagcaccgcttcggggtggcccagaaggag
cgcctcaagagcctgcgcgccgaggtggacatcctcaccatgaccgccacgcccatcccg
cgcaccctgaacatggccatgagcggcatccgcgacctctccatcatcgccaccccgccg
gcgcggaggctgtcggtgaagaccttcgtgcagcgccgcgaggagccgctcatcaaggag
gcgatcctgcgcgagatactgcgcggcgggcaggtctacttcctgcacaacgaggtcaag
accatcgagaccgccgccgagaggctgcgggagctggtgcccgaggcgcgggtcggggtg
gcccacggccagctgccggagcgcgccctggaacgggtgatgtcggacttctaccacaag
cgcttcaacgtgctggtctgctccaccatcatcgagaccggcatcgacgtgcccagcgcc
aacaccatcctgatcgagcgggccgacaagttcggcctggcccagctgcaccagctgcgc
ggccgggtcgggcgcagccaccaccaggcctacgcctacctgctcacgccaccgcccagg
gcgatgaccaaagacgccatcaagcgcctcgaggcgatcggcgccgccgaggaccttggc
gccggcttcaccctggccagccacgacatggaaatccgcggcgccggcgagctgctcggt
gaggagcagagcgggcagatggaggcgatcggctatggcctctacatgcagatgctcgac
cgcgcggtggcggcgatccgcgccggcaagacgcccaacatcgaatccccgctggacgag
ggcgtcgaggtgagcctcaacctgccggcgctgatccccgacgactacctgcacgatgtc
cagcagcgcctggtgatgtacaagcgcatcagcagtgccgccgacgaggccgcgctcaag
gagctgcaggtggagatgatcgaccgcttcggccttttgccggccccggtcaagaccctg
ctgcgccagacgaaactgcgccagcgcgccgagcaactgggcatcgtcaagctggaggcg
ggccccgagcggggccgggtgatcttcggcggccacacccgggtcgacccgctgaccctg
gtggagctgatccagcgcgaaccgaaccgctaccggctcgacggcgccgacaccctgcgc
ttcgaggcggccatggagcaggaggaggcacgcttccaggcggtggagcagctgctggag
accctcaaccgcaaggccgaggcggcctga
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integrated database retrieval system
