Halobacillus amylolyticus: MUO15_19635
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Entry
MUO15_19635 CDS
T09510
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hamy
Halobacillus amylolyticus
Pathway
hamy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hamy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUO15_19635 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hamy03019
]
MUO15_19635 (rnr)
03016 Transfer RNA biogenesis [BR:
hamy03016
]
MUO15_19635 (rnr)
Enzymes [BR:
hamy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MUO15_19635 (rnr)
Messenger RNA biogenesis [BR:
hamy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MUO15_19635 (rnr)
Transfer RNA biogenesis [BR:
hamy03016
]
Prokaryotic type
tRNA degradation factors
MUO15_19635 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
RNase_II_C_S1
Herpes_gp350_C
Motif
Other DBs
NCBI-ProteinID:
UOR11748
LinkDB
All DBs
Position
3907526..3909814
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AA seq
762 aa
AA seq
DB search
MNTELKQQIRDYFNETASKPLSVQELEEALELTDKNEFKDLMKALNSLEEEGELVRTRKN
RFGLPEKMNLIRGKIQMHAKGFAFLIPEDDDKDDVYIHHSDLHSAMNNDKVLVRVEKRDE
NGQRPEGTVIRIVERATTRVVGTYESSRNFGFVVADDKRIPNDIFIPKGQTNGAADGHKV
IVSITKFPEERMSAEGEIVEILGHKNDPGIDIISIIHKHGIKTEFPEEVLGQAGEAPDQI
SEDEIKNRRDLRDEMIVTIDGADAKDLDDAVTVKQLDNGNYKLGVHIADVTYYVEENSAI
DKEARERATSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEINSRGDVVGHEIFQ
SVIKTNERMTYKDVNSILEDNDEALIERYKDLVPMFREMEGLAATLRNKRFGRGAIDFDF
KEAGVIVDEEGKAVDVKLRERSVAERLIEEFMLAANETVAEHFHWMDVPFIHRVHEDPDE
SKLQNFFEFVANLGFSVKGTADNIHPQALQKVLEEVKETHEEMIISKLMLRSMQQAKYDP
QSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLVEDRLDYKTRKHWKDQLPEIAKHS
SEMERAAVDAERETDDLKKAEYMEDKIGEEFDGVVSSVTSFGLFVELPNTVEGLVHVSTL
TDDYYNFQEKQFAMIGERTGNIFRIGDEITIKVVNVNLDERVVDFEVVGMKPRKERERKA
RPKQIQSEAPDKKKNKKKTKQKGNKPFFRNKGVPKKGRKKKK
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagaactaaaacagcagatacgtgactattttaacgaaacggcctcaaagcca
ttatctgtacaggagctggaagaagccttggaacttacagataagaatgaatttaaagat
cttatgaaggctttaaattctctggaggaagaaggagagcttgtccgaacgagaaagaac
cgttttgggctcccggaaaagatgaacctcatacgtggtaaaattcaaatgcatgccaag
ggatttgcgttcttaatccccgaggatgatgacaaggatgatgtgtacatacatcactct
gacttacattcagccatgaataacgataaggttctcgtccgggtagaaaagcgagatgaa
aatggacagcggccagagggaacagtgattcgaattgttgagcgtgcgaccacacgagtc
gtggggacatatgaatcaagccgaaactttggctttgtcgttgcggatgataaacggatt
ccaaatgatatattcattcccaaaggacaaacaaacggagcagcagatgggcataaggtc
attgtatcgattaccaagttccctgaagagcgaatgagtgcagaaggggaaatcgttgaa
attcttggccataaaaatgatccaggaattgatattatttcgattattcataaacacgga
attaaaacggaatttcccgaggaggtacttggacaggcaggggaagccccagaccaaatt
tcagaagatgaaattaaaaatcgccgggacctccgtgatgaaatgatcgtcacgattgat
ggggctgatgccaaagacttggatgatgccgtaacagtaaaacagcttgataatggaaat
tataaattaggtgtccacattgccgatgttacttattatgtcgaggagaattccgcgatc
gataaagaagctcgcgagcgcgcaacaagtgtttatttagttgatcgggtcattccaatg
attccacaccgattatcaaatgggatttgttcactgaacccacaagtagaccgtttaacc
ctatcgtgtgagatggaaatcaacagccgtggtgacgtagtaggccatgaaatttttcaa
agtgtaattaagacaaatgaacgaatgacctataaggatgttaattcgattttagaagat
aatgacgaagcattaatcgagcggtataaagatcttgtgcccatgttccgtgagatggaa
ggattggcggcaacccttcgtaacaaacgttttggtcgtggggcaattgattttgacttt
aaagaagcgggcgttattgtagatgaagagggtaaagctgtcgatgtcaaattgcgtgag
cgatctgtagcagagcgcctaatcgaagagttcatgctggcagccaacgaaacagttgct
gagcacttccactggatggatgtgccgtttatccatcgtgttcacgaagatccagatgag
tcaaaattacaaaacttctttgaatttgtagccaatttaggtttttccgtgaagggaact
gctgataacattcatccccaagcactgcaaaaggtacttgaagaagttaaagagacacat
gaggaaatgattatttcaaaactcatgcttcgctctatgcaacaagcaaaatacgatccg
caaagtctcggtcacttcggcttatcaacagagttctatacccatttcacctcaccgatt
cgtcgttatcccgacttaattgtgcatcgattaattcgaacctatctggtggaagaccgc
ttagattataaaacacggaagcattggaaggatcaattgcctgaaatagccaaacattct
tcagagatggaaagagccgcggttgatgctgaacgcgaaacagatgacctgaaaaaggca
gaatatatggaagataaaataggtgaagagtttgatggtgtggttagctcagtaactagc
tttggattgtttgttgaactgccgaacacagtggaaggactcgttcatgtaagtacgctg
acagatgactactataacttccaagaaaagcaatttgctatgattggggaaaggaccggc
aacatcttcagaattggtgatgaaattaccataaaagtcgtcaatgtgaatttggatgag
cgggtagtagattttgaagtggttggaatgaagccaagaaaagaacgagaacgtaaagct
cgtcctaagcaaatacagtcagaagcacccgataagaaaaaaaataagaaaaagactaaa
caaaaggggaacaaacctttctttcgcaacaaaggagtgccaaaaaaaggccgcaagaag
aaaaagtaa
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