Hyphomonadaceae bacterium UKL13-1: AEM38_08635
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Entry
AEM38_08635 CDS
T04338
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hbc
Hyphomonadaceae bacterium UKL13-1
Pathway
hbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AEM38_08635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbc03400
]
AEM38_08635
DNA repair and recombination proteins [BR:
hbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AEM38_08635
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AEM38_08635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SWI2_SNF2
AAA_16
AAA_22
DUF87
Kinesin
UB2H
Microtub_bd
ATPase_2
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AMS30930
UniProt:
A0A7U4QWC9
LinkDB
All DBs
Position
complement(1851175..1853367)
Genome browser
AA seq
730 aa
AA seq
DB search
MTGVEFAGDPFVYDFDYNVLDARGSAAPPAWQPHRPDLPEKFEGGKRFELVSDYQPAGDQ
PAAIEALCEAAQEGEKDQVLLGVTGSGKTFTMAQVINRLQRPALILAHNKTLAAQLYGEF
KNFFPNNAVEYFVSYYDYYQPEAYVPRTDTYIEKESNINEQIDRMRHAATRAILERDDVI
IISSVSCIYGIGSVESYSSMTFVLKPGDRADPQTVTRDLVALQYKRNDIYFARGNFRLRG
DALDIFPAHYEDRAWRVLFFGDEVEAIHEFDPLTGKKTADLEAIKVYANSHHTTPRPTLS
QAIEKIKAEAKARVEWFEKNGLLIEGQRLKQRTDFDLEMLLATGSCAGIENYSRYLSGRN
PGEPPPTMFEYIPDNALVFVDESHVTIPQIGGMFRGDYSRKKTLSDYGFRLPSCMDNRPL
RFEEWDAMRPQTISVSATPGPWEMNQTGGVFVEQVIRPTGLIDPPVEIRPVTGQGFTQVD
DCIAESRMTIAAGGRVLVTTLTKKMAEDLSEYMHEQGLKVRYMHSDIDTVERIEIIRDLR
LGNFDILIGINLLREGLDIPECQLVCILDADKEGFLRSETSLVQTIGRAARNVDGRVILY
ADSITGSMKRAIDETDRRRAKQVAWNEANGITPQSIRSNIHDILNSPYGKEGVTIGLGAD
SDATANVKGKGRGKGKAETTPEAGAPGHNFKAALADLEKRMRAAAADLEFEEAARLRDEI
KRLERLELGM
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtgacgggggttgagtttgcgggcgacccgtttgtctatgattttgactataatgtactc
gatgcgcgcggcagtgccgctccaccggcttggcagccccatcgccctgatctgccggag
aagtttgaaggcgggaagcgctttgaattggtgagcgattatcagcccgccggcgatcag
cctgccgcgattgaggccttgtgtgaagccgcccaagaaggcgagaaggatcaggtgctg
ttgggggtcacaggctcaggcaagaccttcaccatggcgcaggtgatcaatcggctgcag
cggcccgcgcttatcctcgcgcacaacaagacgcttgccgcccagctttatggcgagttc
aagaacttctttcccaataatgccgtcgaatatttcgtctcttactatgattattatcaa
cccgaagcctatgtgccgcggaccgatacctacatcgagaaagagagcaatatcaacgaa
cagatcgaccggatgcgtcatgcggcaacccgcgccattttggagcgcgatgatgtaatc
atcatttcttcggtctcgtgtatctatggcattggctcggtggaaagctattcctcgatg
acctttgtcttgaagccgggggatcgggccgatccgcagacggtgacacgcgatctggtc
gcgctgcaatataagcgcaatgatatctacttcgcgcgcggcaatttccggctgcgcggc
gatgcgctcgatattttcccggcccattatgaggaccgggcttggcgggtcttgttcttt
ggcgatgaagtcgaggcgatccatgaatttgacccgctgacgggtaagaagacggcagac
ctcgaagccatcaaagtctatgccaatagccaccacaccacgccgcgcccaacactgagc
caagcgattgagaagattaaggccgaagccaaggcccgcgtggaatggtttgagaaaaat
ggcctgctgattgaaggccagcgcctgaagcagcgcacggacttcgatctcgaaatgctg
ctggcaaccgggtcttgcgccgggattgagaattattctcgctatctctcgggccgcaat
ccgggcgagccaccgccgaccatgttcgaatatatcccagacaatgctttggtctttgtc
gatgaaagccacgtgacgattccccagattggtgggatgttccgcggcgactatagccgc
aagaaaacgctgtcggattatggctttcgcttgccctcctgcatggacaatcgacccctg
cggtttgaggaatgggacgcaatgcggccccagacgatcagtgtgtcggccacaccgggt
ccgtgggagatgaaccagacgggcggggtgtttgttgagcaagtcatccgcccaaccggc
ctgatcgatcccccggttgagatccgcccggtgacgggccaaggctttacccaggtcgat
gattgtatcgcagagtcacggatgaccattgccgctggcgggcgcgtactggtgacaact
ttgaccaagaaaatggccgaggacttgagcgaatatatgcatgagcagggcttgaaggtc
cgctatatgcacagcgacattgatacggtcgaacgcattgaaatcatccgcgaccttcgc
ctcggcaattttgatattctgatcgggatcaatctgttgcgggaaggtcttgatattcct
gagtgccaattggtctgtatcttggatgccgataaggaagggtttttgcggtcggagacc
agtctggtgcagacgattggccgtgcggcgcgcaatgtggatggccgcgtgatcttgtat
gcggactccatcactggctcgatgaagcgcgccatcgatgagaccgatcgccgtcgtgcc
aagcaagtggcgtggaacgaggccaatggcatcacgccacaatctattcgctctaacatt
cacgacatcctcaatagcccctatggcaaggagggtgtcacgattggtctgggggccgat
agcgatgccacagccaatgtgaaaggtaagggcaggggcaaaggcaaggccgagacgacg
ccagaggcgggtgcgcccggacataacttcaaagcggctctcgctgaccttgagaagcgg
atgcgggcggcagcagccgaccttgagttcgaagaggccgcccgcctgcgcgacgagata
aagcggttggagcgcttggaattggggatgtag
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