KEGG   Hippocampus comes (tiger tail seahorse): 109510379Help
Entry
109510379         CDS       T04969                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6 isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:hcq01009]
    109510379 (hdac6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcq03019]
    109510379 (hdac6)
   04131 Membrane trafficking [BR:hcq04131]
    109510379 (hdac6)
   03036 Chromosome and associated proteins [BR:hcq03036]
    109510379 (hdac6)
Enzymes [BR:hcq01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109510379 (hdac6)
Protein phosphatases and associated proteins [BR:hcq01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     109510379 (hdac6)
Messenger RNA biogenesis [BR:hcq03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     109510379 (hdac6)
Membrane trafficking [BR:hcq04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    109510379 (hdac6)
Chromosome and associated proteins [BR:hcq03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     109510379 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var
Motif
Other DBs
NCBI-GeneID: 109510379
NCBI-ProteinID: XP_019716188
LinkDB All DBs
Position
Unknown
AA seq 1086 aa AA seqDB search
MSSGADDSPPLASSSSCGQKSVRRSPRLSPQGGVVQGNQRKKKSGSLQEAKKKGRMSRNR
EDRDEELQVELQRLDLSSRSSASGTGLVYSEIFTHHQNLWDPNHVESPARVTSIMEELDR
QGLLSRCVQVQPRAATDEDLLLVHTKHYIELIKSTQTMSETELHQFSDKYDSVYIHPETF
QVSILAVGSVLQLVDQVLTSKLRNGFAVIRPPGHHAQSNEANGFCVFNNVAIAARYAQNK
HKVKRVLIVDWDIHHGQGVQRVFQEDPSVLYVSVHRFERGAFWPHLPESDSTFVGGAPAE
GRNINLAWSAAGKSDADYMCAFQRLLLPVAYEFQPQLVLVSAGFDAALGDPKGQMCMSPE
CFQTLTHMLMSLAEGQLILALEGGYNLQATAKGAAACVRALLGGACAPMAPPTAPSDCAL
KSISESISALYPYWTSLQVLEGDHLAEGQVLGLATDEESPPCPAAMTTGLVYDERMMEHL
NLWDRHHPEQPQRIFKIFSRHQQLGLVERCQRIPSRFATEEELAMCHTADHIQQMKSTTT
MKNRDLHKLGQEFNSIYINNQSFKSALLAAGSCFNAVDHIMTGQVRSGVAIVRPPGHHAE
SGTACGFCFFNTAALAARYAQKTCRHAPVRVLILDWDVHHGNGTQHMFEDDNSVLYVSLH
RYDNGNFFPSSEDAAPNRVGVAKGTGFNVNVAWSGGRMGDAEYLAAFHHVVMPIAVEFNP
GLVLVSAGFDAARGDPLGGYRVTPECYAHLTHMLMSLACGRVLLILEGGYNLTSISDSMA
MCTSALLGDPPPSLATPLPPPHDAAVAAINEVIRHHAPYWKSLRINIPESLRAAIPSPSA
HRRRSGKGKGRRSRQSGPDQPPLPPAGLEGNTADHSLDQLTQGLASLDISPSAHPPDVEA
ESSEVTSERNRSRAKSSEVSPEQSRSAESSQPPVVIDPAPTDVDPGEEAEPGGACGWSKP
QGTLELTCGVQMAPMYVVDPLSWCPHLDAIKPLPPSGIDIFQHCQDCASEAENWICLTCY
KVACGRYVNEHMLMHGATADHPVVLSFCDLSVWCYACESYVHNQAVFEAKSAAHSAKFGE
EMPPWS
NT seq 3261 nt NT seq  +upstreamnt  +downstreamnt
atgtcgtctggagctgatgattctccaccattggcatcatcatcatcatgtggacaaaag
tcagttcggaggtctcctcgtctgtcccctcagggaggcgtagttcaaggtaatcagcgg
aagaagaaaagtggcagcttgcaggaggcaaagaagaaagggagaatgtcgaggaaccga
gaagaccgtgacgaggagcttcaggtggaactgcagcggctggacctgtccagcaggtca
tccgccagtggaacaggtttggtttattctgagatcttcacccatcatcagaacctgtgg
gaccccaatcatgtagaaagtccagccagagtgacatccatcatggaagagctggacaga
caagggctgctgtcacgctgcgttcaagtgcagcccagagcagccactgatgaagacctg
ttactcgtgcacacgaagcactacatcgagctgattaagtccactcagacgatgtctgaa
acagaactgcatcagttttctgacaaatatgattccgtttatatccatcccgagaccttc
caggtgtccatcttggcggtgggttcagtgctccagctagttgaccaggtgttgacatct
aaactgagaaacggctttgctgtcatcaggcctccaggacatcacgctcagtcaaacgag
gccaacggtttttgtgttttcaacaacgtggccattgcagctcgttacgctcagaacaaa
cacaaagtcaaaagggtgttgatcgtggactgggacattcatcacggtcaaggtgtccaa
cgtgtgttccaagaagaccccagcgtgctgtacgtgagcgtgcacaggtttgagcggggt
gccttctggcctcacctgccagagtctgacagcacatttgtgggcggcgcccccgccgaa
ggacgaaacatcaacctggcctggtccgcggccggaaaaagcgacgcagactacatgtgt
gctttccagcgactgctgctcccggtcgcctacgagtttcagccgcagctggttctggtg
tctgctggttttgatgccgcactgggggatcccaagggccagatgtgcatgagtcccgaa
tgtttccagacactgacacacatgctgatgtctttggcagaaggtcaactcattctggct
ctcgagggaggttacaacctgcaggcgacagcgaagggtgctgccgcttgtgttcgtgcc
ttgctggggggagcctgtgcaccaatggctccgcccactgctccgtctgactgtgccctg
aagtccatctctgagagcatctcagctttgtatccatattggacctcactgcaagtgctg
gagggcgaccatcttgctgaaggacaagtcctcggattagcaacggatgaggagagcccg
ccgtgtcccgctgccatgacaacgggcctggtgtacgacgagagaatgatggagcacctg
aacctgtgggacaggcatcatcctgaacagccgcaaagaatcttcaagatcttctcaagg
catcagcagctcggtctggtggaacgttgccagcgcattccgtctcgcttcgccaccgag
gaggagctcgccatgtgtcacacggcggaccacatccagcagatgaagtcgaccactacg
atgaagaacagggatttgcacaaactgggccaagagttcaactccatctacatcaacaat
cagagtttcaagtcagccctgctggccgccggaagctgcttcaatgctgtggaccacatt
atgactggacaggtgagaagcggcgtggctatcgtgcgtccccccggtcatcacgccgag
agtgggactgcgtgcggtttttgtttcttcaacacggcggcactcgccgctcgctacgcg
cagaagacttgccggcatgcgcccgtccgagtcttaatcctggactgggacgttcaccac
ggcaacggcacgcagcacatgtttgaagacgacaacagcgtcctctacgtctccctccat
cgctatgacaacgggaacttcttcccgtcctcggaggacgccgccccgaatcgggtggga
gtggccaaggggacgggcttcaacgtcaacgtggcgtggagcggcggcaggatgggtgac
gccgaatacctcgccgccttccaccacgtcgtcatgccgattgccgttgagttcaatcca
ggtctggtgttggtgtcggcgggattcgacgccgcgcggggcgaccctctgggcggatac
cgcgtgacccccgagtgctacgcacacctcacgcacatgctgatgtcgttggcttgtggc
cgagttttactcatattggagggcggttacaacttgacgtccatctccgactccatggcc
atgtgcacgagcgcgctgctgggtgatcctcctccttcgctggcgacgcccctcccccca
cctcacgacgccgccgtggcagccatcaatgaggtcatccggcaccacgccccctactgg
aagtcgttgcggataaacatccccgaatccctgcgagcagctataccttccccgagcgct
catcggaggcgcagtggaaaaggcaaaggcaggaggtcaagacagagtggtccagaccaa
ccacccctgccccctgctggactggagggcaacacagcagaccacagtttggaccaactc
acacaaggtttggccagcttggacatcagtccaagcgcgcacccgcccgacgtggaagcg
gagtcaagtgaagtgacgtctgagcggaaccggtccagggccaagtcgagtgaagtgtcc
cctgagcagagccgatcagcagaaagctcacagccaccagtcgtcatcgaccccgcacca
acagatgttgaccctggggaggaggcggagcctgggggagcgtgcggttggtccaagcct
caaggaactctggagctgacgtgtggcgtgcagatggcccccatgtatgtggtggaccct
ctgtcctggtgtcctcacctggacgccatcaagcccctgcccccatctggtatcgatatc
ttccagcactgtcaggactgtgcctcggaggcagagaactggatctgcctcacctgctac
aaggtggcgtgcggccgctacgtcaacgagcacatgttgatgcacggtgccacggccgat
catccggtggtgctgagtttctgcgacctctccgtgtggtgctatgcgtgcgagtcctac
gtgcacaaccaggccgtgtttgaagcgaagagcgccgcccacagcgccaagtttggagag
gagatgccgccctggagttag

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