Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_2087
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Entry
HDEF_2087 CDS
T00911
Symbol
dnaX
Name
(GenBank) DNA polymerase III, tau and gamma subunits; DNA elongation factor III
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030
DNA replication
hde03430
Mismatch repair
hde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDEF_2087 (dnaX)
03430 Mismatch repair
HDEF_2087 (dnaX)
03440 Homologous recombination
HDEF_2087 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hde03032
]
HDEF_2087 (dnaX)
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_2087 (dnaX)
Enzymes [BR:
hde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDEF_2087 (dnaX)
DNA replication proteins [BR:
hde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDEF_2087 (dnaX)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDEF_2087 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_tau_5
DNA_pol3_delta2
DNA_pol3_gamma3
AAA
RuvB_N
AAA_22
AAA_16
AAA_5
AAA_14
AAA_assoc_2
AAA_18
ResIII
Adeno_E1B_55K_N
AAA_30
AAA_2
PIF1
nSTAND3
TsaE
EAD10
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
ACQ68653
UniProt:
C4K7W0
LinkDB
All DBs
Position
1908949..1910871
Genome browser
AA seq
640 aa
AA seq
DB search
MSYQVFARKWRPQTFSEVVGQEHVLTALVNSLSLGRIHHAYLLSGTRGVGKTSIARLIAK
GLNCTSGITATPCGKCIHCQGIEQGHFIDLIEIDAASRTKVEDTRELLDNLPYSPTQGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPSHVKFLLATTEPKKLPVTIISRCLQFHLKALNA
LVILNQLEKILAAEKIDSDTEALKLLAKAASGSMRDALSLTDQAVAIGSGKVTTQIVREM
LTILDDGQSLSIIEALAKADAEKIMFEIEQTAAVGKDWENLLIEMLNLFHRIAIKQLLPE
TSYKEYNEVEPEHIELGLSKLARTLAPEKIQFYYQTLLIGRKELPYAPNHRMGVEMTLLR
ALAFHPKKSFPDSKSESIKKNFFDSTENFSMPHLSKQTTENVEALNNKAPETPIVEVLNT
TKILKTRTKLLELQYAPTSKKKENLKNELSVPLEGLIVQSNSFIAKAKKKEIDDSNTRKL
FSEKELSSTQKVLSPVLEYEKSPELLSKLLEEVIKRDPWAAEVEQLGLPKLVHQLALNSF
KKQTINHKIYLHLRSAQRHLNSDSAHKILTEALSHFYNNMVEIIIIEDDDELQLTPWELR
KRIYEEMLTKACQSIIADDTIHTLCGLFDAELDKNSIRPI
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcaagtctttgcccgaaaatggcggccacaaactttttccgaagtggtcggc
caagaacatgttttaactgcacttgttaatagcctttctctggggcgtattcatcatgcg
tatcttttatctggtacgcgtggagtaggaaaaacctctattgctcgtttaatagcaaaa
gggctgaattgtaccagcggtattactgccactccttgtggtaagtgtattcattgtcag
ggaatagaacagggacattttatcgatttaattgaaattgacgcggcatctcgtactaaa
gtagaggatacacgtgaactattagataacttgccgtattcccctacccaaggccgcttt
aaagtttatttgatagatgaagtccatatgctttcacggcatagttttaatgcattgctg
aagactttagaagaaccgccctctcatgtgaaattcttactggcaaccactgaaccaaaa
aaattacccgtcactattatttcacgttgtttacaatttcatctcaaagcattaaatgca
ctggttattctgaatcagctggaaaaaatattagcggctgaaaaaattgatagtgatacc
gaagcgttaaaactattggcgaaagcggcctctggtagtatgcgtgacgctttgagtctt
accgatcaagcggttgctattggatctgggaaagtgaccactcaaattgttcgtgaaatg
ctaacgatacttgatgatgggcaatcattatctattattgaggctctggctaaagctgat
gctgaaaaaataatgttcgagatagaacaaaccgctgctgttggaaaagattgggaaaat
ttactgatagaaatgttaaatttattccatcgtattgctatcaaacaattattaccagag
acttcttataaagaatacaatgaagtagagccagaacatattgagcttggtttatctaaa
ctggccaggactttggctcctgaaaagattcaattttattaccaaacgttattgattggg
cgtaaagagcttccttatgcgcctaatcaccgtatgggagtggaaatgacgcttctaaga
gcgttagcgtttcatcccaaaaaatcttttccagattcaaagtctgaatctataaaaaaa
aacttttttgatagcaccgaaaatttttctatgccacatttgtctaaacaaacgactgaa
aatgtggaagccctcaataacaaagctccagagactcctatagtagaagtattaaataca
actaaaatattaaaaacacgaacaaaattactagaattacagtatgcgcctacgtctaaa
aaaaaagagaatctaaaaaatgagctatccgttcctttagaaggattaatcgttcaatca
aattcattcattgctaaagctaaaaaaaaagaaatcgacgattcgaatacacgcaagttg
ttctctgaaaaagaattatcatcgacacagaaagttttatctccagtattagaatatgaa
aaatcaccggagttgctctctaaattgctggaggaggtcataaagcgtgatccttgggcg
gcggaagtggaacaattaggtttgccaaaattggtgcatcaacttgctttaaattccttt
aaaaagcaaacgataaatcacaaaatttacttgcatttacgctctgctcaacgtcatcta
aattcagattcagcacataaaattcttactgaggccttaagtcatttttataataatatg
gttgaaattattattattgaagatgatgatgagttacaattgactccatgggagttaagg
aaacggatttatgaggaaatgctgacaaaggcatgtcagtcaatcatagcggacgatact
attcatactctctgtgggctctttgatgcagagctagataaaaatagcattcgccctatt
taa
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