Hyphomicrobium denitrificans 1NES1: HYPDE_36398
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Entry
HYPDE_36398 CDS
T02646
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYPDE_36398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdt03019
]
HYPDE_36398
Enzymes [BR:
hdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYPDE_36398
Messenger RNA biogenesis [BR:
hdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYPDE_36398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Shikimate_DH
UvrD-helicase
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
AGK58951
UniProt:
N0BEN8
LinkDB
All DBs
Position
complement(2730487..2732460)
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AA seq
657 aa
AA seq
DB search
MQNLPNFLDLLSEHTDTPAIALRWRSGLRATPSGSTTALDPALRSILTSKATPRKRRCGP
WDAARHEMHGPRSPWEIFILTVQTFEAFGFAEPLSRALTQCGYVAPTPIQVQALPPQLEG
RDLLGMAETGSGKTATFVLPILQKIASQSIESAPKQVLALVLAPTRELAIQIDQEVASLA
RNMRIRRAVVLGGVSKGPQINALKRGVHVLVATPGRLLDLVNMRTCDLSRVDTLVLDEAD
RMFDMGFIRDIKKIVALLPAVRRTALFSATMPAEIKKFAYEVLKDPYRVDLSPKSVVVDR
IDQKVMIVRTPEKQSRLHTILSDEACKRVIVFTRTKRGADRVADRLGMASISASAFHGNK
AQNARQRALNDFMMGHIRVLVATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARK
GNSGIAISLCDPSERQEIAAIERLMKQKLEVIADVGGEALPMPERRPHHHAENGSRREGG
RHNDRRRDGGHRGDGHVKHRRGDGRSIPPSAARHADNGHEHQRAAIAAEGEAMFGVGARM
ERDPQERRQHGNHSGRPHRGERKHHERNGGEPRANGHRHRDDRPAHHGKPSRPEHAHAGH
HREDGQAPEQRKNEHRQPERRQHERGDRRPSWGSSDAPKFMKRRDDSRGRQSRNPAS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaatcttccgaacttccttgacttgctgagcgaacacaccgatacaccggccatt
gctcttcgatggcgctcgggtcttcgtgccactccaagcggttcaactaccgcgctcgac
cctgcattgagatcaatccttacaagcaaggccacaccccgaaagcgccggtgtgggcca
tgggacgcagcccggcatgagatgcacgggcctcgaagcccttgggaaattttcattttg
acagttcagactttcgaggcattcggtttcgccgagcctctttcgcgtgcccttacgcag
tgcgggtacgtagcgccgacgccgatccaggtgcaggcgctgccgccgcagctcgaaggc
cgcgatcttctcggcatggcggaaaccggttcgggaaaaaccgcaacgttcgttcttccc
atcctgcagaagattgcctcccaatccatcgaatccgctccgaagcaggtattggcgctt
gtcttggcgccgacgcgagagcttgcgatccagatcgatcaggaggttgcgagcctggcg
cgcaacatgcgcattcgccgcgcagtcgttctcggcggcgtgagcaagggaccgcaaatc
aacgcgctgaagcgcggcgtgcatgtgctcgtcgcgacgcccgggcgtctgctcgatctc
gtcaacatgcgcacctgcgatctgtcgcgcgtcgacaccctcgtgctcgacgaagccgac
cgcatgttcgacatggggttcatccgcgacatcaaaaaaatcgtcgcgctgcttccggca
gtccggcgcacggcgctcttctctgcaaccatgccggccgagatcaagaagttcgcctat
gaggtcctgaaagacccgtatcgtgtcgatctctcgccgaagtcggtcgtcgtcgatcgc
atcgaccagaaggtgatgatcgttcggacgccggaaaagcaaagcaggcttcatacgatc
ctttcagacgaagcctgcaagcgcgtcatcgttttcacgcggacgaagcgcggcgccgac
cgtgtcgccgaccgccttggtatggccagcatcagtgcttcggcatttcatggtaacaag
gcgcagaatgcgcgtcagagggcgcttaatgacttcatgatgggccacattcgtgtgctc
gtcgcgaccgatatcgccgcccgaggcatcgacgtttcgaacatcacgcacgtcgtcaat
ttcgacatgccgctcgatccggaaacctacgtgcatcgcgtcggtcgcaccgcacgcaaa
ggcaacagcggcatcgcaatctcactatgcgatccgtcggagcgccaggaaatcgcggcc
atcgaacgcctgatgaagcagaagctggaagtcatcgccgatgtcggtggcgaagctctg
ccgatgccggaacgtcgcccgcatcatcacgctgaaaacggctcgcgccgcgagggcggt
cggcacaatgatcgccgtcgtgacggcgggcatcgcggtgacgggcacgtaaagcaccgc
aggggtgacggccgctccatcccgccctcggcagcacggcacgccgacaacgggcacgag
catcagcgggccgctattgctgcggaaggcgaggccatgttcggcgtcggcgcacgcatg
gagcgcgatccgcaggagcgtcggcagcacggcaatcattccggcaggccgcatcgcggt
gagcgcaagcaccatgaacgcaacggcggggagccccgtgcgaacgggcatcgtcatcgc
gatgatcggcccgctcaccacggcaagccgtcgcgcccggagcatgcacatgctggccac
catcgcgaagacggccaggcaccggagcagcgcaaaaacgagcatcgtcagcctgagcgt
cgtcagcacgagcgcggtgaccggcggccatcgtggggcagttccgatgcaccgaaattc
atgaagcggcgggacgacagccgcggccgccaaagccgcaacccggcttcatga
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