Helicobacter pylori F16: HPF16_1348
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Entry
HPF16_1348 CDS
T01910
Symbol
trmE
Name
(GenBank) tRNA modification GTPase TrmE
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
hef
Helicobacter pylori F16
Brite
KEGG Orthology (KO) [BR:
hef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hef03016
]
HPF16_1348 (trmE)
Transfer RNA biogenesis [BR:
hef03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
HPF16_1348 (trmE)
Prokaryotic type
Methyltransferases
HPF16_1348 (trmE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrmE_N
MnmE_helical
MMR_HSR1
FeoB_N
Dynamin_N
RsgA_GTPase
AIG1
GTP_EFTU
ABC_tran
Ras
cobW
Arf
ATP_bind_1
MMR_HSR1_Xtn
iSTAND
AAA_29
ATP-synt_ab_N
FtsK_SpoIIIE
Roc
EF-G-binding_N
Motif
Other DBs
NCBI-ProteinID:
BAJ55945
LinkDB
All DBs
Position
1408821..1410173
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AA seq
450 aa
AA seq
DB search
MNDTIAAIATPLGKGAISVIKISGNNALNILKQLTQKQDFTPRYAYVRDIFSNGVLLDKA
LVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNLGARLAKAGEFSKKAFLNHKMDL
SEIEASVQLILCEDESVLNALARQLKGELKIFIEEARDNLLKLLASSEVLIDYSEEDIPS
DFLDEVSLNLEKQIASFKDLLDFSNMQKQKNKGHALSIVGKPNAGKSSLLNAMLLEERAL
VSDIKGTTRDTIEEVIELQGHKVRLIDTAGIRESADKIERLGIEKSLKSLENCDIILGVF
DLSKPLEKEDFNLIDTLNRAKKPCIVVLNKNDLAPKLELEILKSYLKIPYSLLETNTLNS
KACLKDLSQKISAFFPKLDTQNKLLLTSLAQKTALENAIFELQNAKDHLETLELFSYHLL
SAIENLNSLTRPYETSQMLDSMFSEFCLGK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacaccatcgccgctatcgctacccctttaggcaagggagcgattagcgttatt
aaaatcagtggcaataacgctctaaatattctcaaacaactcacccaaaaacaagacttc
acccccagatacgcttatgtgcgcgatattttttctaatggtgttttattagacaaagcg
ttagtgatttatttcaaagccccctatagtttcaccggcgaagatgtgtgcgaaatccaa
tgccatggaagcccccttttagcgcaaaatatcttacaagcttgtttgaatttaggggct
aggcttgctaaagcgggggaatttagtaaaaaagcctttttaaaccataaaatggatttg
agcgagattgaagcgagcgttcagctcatcctttgtgaagatgaaagcgttttaaacgct
ctagccaggcagcttaagggcgagttaaaaatttttattgaagaggctagagataatctt
ttaaagcttttagccagctcagaagttttgattgattatagcgaagaagacattcctagc
gattttttagatgaagtgtctcttaatttagaaaaacaaatcgcctcttttaaagactta
ttggatttttctaacatgcaaaaacaaaaaaacaaagggcatgccttaagcattgttggc
aaacccaatgctggcaaaagctccctattaaacgccatgcttttagaagaaagggcttta
gtgagcgatattaaaggcacaacaagagacaccatagaagaagtcattgaattgcaaggg
cataaggtgcgcttgattgatacggctggcattagagagagcgcggataaaatagaacga
ttagggattgaaaaaagccttaaaagtttagaaaattgcgacattattttaggcgtgttt
gatctttctaaacccctagaaaaagaagattttaaccttattgacaccctcaatcgcgct
aaaaagccttgcattgttgttttgaataaaaacgatttagcgcccaagctggagcttgaa
atcttaaaatcttatcttaaaatcccttattctttactagagaccaacaccctaaattcc
aaggcttgtctgaaagatttgagccaaaaaatcagtgcctttttccccaaactagacact
caaaacaagctcttgctcacttccctagcccaaaaaactgccctagaaaacgccattttt
gaattgcaaaacgctaaagaccatttagaaactttagagcttttttcttatcatctttta
agcgcgatagaaaacttgaactcgctcacccgcccttatgaaaccagccaaatgctagac
agcatgtttagcgaattttgcttaggtaaatga
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