Herbiconiux sp. L3-i23: L3i23_09020
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Entry
L3i23_09020 CDS
T08550
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
heh
Herbiconiux sp. L3-i23
Pathway
heh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L3i23_09020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
heh03400
]
L3i23_09020
Enzymes [BR:
heh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L3i23_09020
DNA repair and recombination proteins [BR:
heh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L3i23_09020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Pns11_12
Motif
Other DBs
NCBI-ProteinID:
BDI22126
LinkDB
All DBs
Position
complement(966469..969045)
Genome browser
AA seq
858 aa
AA seq
DB search
MAEPAQTVTVDGRRLRITNLDKVLYPETGTTKADVLDYYARVAEVLIPHVRDRPLTRKRW
VHGVGTDSSPGQVFFQKNLDDGTPDWVARHDIQHSSDRKTYPVANDRATLAWLAQVAALE
LHVPQWRFGRNGQPKNPDRLVLDLDPGEGTGLAECAEVARWAREILEGVGLEPFPVTSGS
KGIHLYAKLDGSRSSDKISEFAHELARALEADHADLVVSDMKKTLRVGKVLVDWSQNNAA
KTTIAPYSLRGRSHPTVAAPRTWDELDDPDLHHLDYREVLERVATIGDSLRAVEPDPGAG
LEPTPETMATFEPTPEARDRLVTYRSMRDAAKTPEPVPAEPSIPSDGRSFVIQEHHATRL
HYDFRLEHDGVLVSWAIPKGVPTSPKENHLAVHTEDHPLEYATFEGTIPKGQYGGGTVTL
WDTGTYELEKWRDDEVIAILHGRPDGGLGGEPVKVALIRTARGGDEKNWLAHRMEPHPHA
HKTEAGSSSKTAASKSTASSKSTASSKSAASSKSTASSKGGAKGTAASAATALEAGPMLA
TLGTESTVSTGESWVFEMKWDGIRALVDVDRGRTDRNVILTSRNGNDLTAAYPELAAIVD
AVDGDEAILDGEIVALDAAGRPDFGLLQKRMNLQGAADIGRARRDVPVRFVVFDLLAAGD
RSLLGAPYDERRARLEEIVEGTSVVQVPAVFDGEDTSVDEAMAASRSLRLEGVVAKKRSS
TYSPGRRSGAWIKLKHHGTQEVVVGGWRPGQGRREGGLGSLLLGIPGENGLEYVGKVGTG
FADRDLDEIAARLRPLARKTSPFVDVPRLDARDAHWVTPSLVGEVEYAEWTATGRLRQPS
WRGWRTDKSADDVVRETL
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcccgcacagaccgtcaccgtcgacggccgccgcctgcgcatcaccaatctc
gacaaggtgctctaccccgagacgggcacgaccaaggccgatgtgctcgactactacgcc
cgcgtcgccgaggtgctgatcccccatgtgcgcgaccgtcctctgacccgcaagcgctgg
gtgcacggtgtcggcaccgactcctcgcccggccaggtcttctttcagaagaacctcgac
gacggcacgcccgactgggtggcccgccacgacatccagcactcgagcgaccgcaagacc
tatccggtggcgaacgatcgagccaccctcgcctggctcgctcaggtcgccgcgctcgaa
ctgcacgtgccgcaatggcggttcgggcggaacggccagcccaagaacccggaccggctc
gtgctcgatctcgaccccggtgagggcacgggtctcgcggagtgcgcagaggtggcccga
tgggcgcgcgagatcctggagggcgtcgggctcgagccgttccccgtcacgagcggcagc
aagggcatccacctctacgcgaagctcgacggcagccggtcgagcgacaagatctccgag
ttcgcccacgagctcgcgcgggccctcgaggccgaccacgccgacctcgtcgtcagcgac
atgaagaagacgctgcgggtgggcaaggtccttgtcgattggagccagaacaacgcggcg
aagacgaccatcgcgccgtactcgctgcgtggtcgctcccacccgaccgtcgccgcgccg
cgcacgtgggacgagctcgacgatcccgacctgcaccatctcgactaccgcgaggtactc
gaacgcgtcgcgacgatcggcgattcgctgcgggcggtcgaacccgatcccggcgccgga
ctcgaacccacccccgagacgatggccacgttcgagccgacgcccgaggcgcgcgaccgt
ctcgtcacctaccgcagcatgcgcgacgcggcgaagacgcccgagccggtcccggccgag
ccctccatcccgtccgacggtcgcagcttcgtgatccaggaacaccacgcgacgcgtctg
cactacgacttccggctggagcatgacggcgtgctcgtgtcctgggcgatcccgaaaggg
gtgccgaccagcccgaaggagaaccacctggccgtgcacaccgaggatcaccccctcgag
tacgcgaccttcgaaggcacgatcccgaagggccagtacggcggtggcaccgtcaccctc
tgggacaccggcacgtacgagctcgagaagtggcgcgacgacgaggtgatcgcgatcctc
cacggcaggcccgacggcggactcggcggcgaaccggtgaaggtcgcgctgatccgaacg
gcgcgcggcggtgacgagaagaactggctcgcgcatcggatggaaccgcatccccacgcc
cacaagacggaggctgggtcgtcgtccaagaccgcggcgtcgaagagcacagcgtcgtcg
aagagcacagcgtcgtcgaagagcgcggcgtcgtcgaagagcacagcgtcgtcgaagggc
ggcgcgaaaggaacggcggcgagcgccgcgacggcgctggaggccggtccgatgctcgcg
accctcggcaccgagtcgaccgtgtcgaccggtgagagctgggtcttcgagatgaaatgg
gacggcatccgcgcgctggtcgacgtcgaccggggacgcaccgaccggaacgtgatcctg
accagccgcaacggcaacgacctcaccgcggcctacccggagcttgcggccatcgtggac
gcggtcgacggcgacgaggcgatcctcgacggcgagatcgtggcgctcgacgcggcggga
cgccccgatttcgggctgttgcagaagcggatgaacctgcagggtgccgcggacatcggt
cgggcgcggcgtgacgtcccggtgcgcttcgtggtcttcgacctcctcgccgcgggcgac
cgttcactgctcggcgccccctacgacgagcgtcgcgcccggctcgaggagatcgtcgag
ggcacgtcggtggtccaggtgccggcggtgttcgacggcgaggacacgagcgtcgacgaa
gccatggcggcgagcagatcgctacggctcgaaggggtcgtcgcgaagaagcggtcgtcg
acctactcccccggcagacggtcgggcgcatggatcaagctcaagcatcacggcacgcag
gaggtcgtcgtcggcggttggcgacccgggcaggggcggcgcgagggcgggctcggctcg
ctgctgctcggcatccccggcgagaacgggctcgagtacgtgggcaaagtcggtaccggg
ttcgccgaccgcgacctcgacgagatcgcggcgcgcctccgaccgctcgcgcggaagacc
tcgccgttcgtcgacgtgccgcgtctggacgcccgagacgcgcactgggtgaccccgagc
ctcgtcggcgaggtcgaatacgccgagtggaccgcgaccggtcggctgcgacagccgtcg
tggcgagggtggcgcaccgacaagagcgccgacgacgtcgtgagggagaccctgtga
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