Helicobacter pylori SouthAfrica7: HPSA_07030
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Entry
HPSA_07030 CDS
T01921
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hes
Helicobacter pylori SouthAfrica7
Pathway
hes03420
Nucleotide excision repair
hes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSA_07030
03430 Mismatch repair
HPSA_07030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hes03400
]
HPSA_07030
Enzymes [BR:
hes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSA_07030
DNA repair and recombination proteins [BR:
hes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSA_07030
MMR (mismatch excision repair)
Other MMR factors
HPSA_07030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ADU85360
UniProt:
E8QTZ6
LinkDB
All DBs
Position
complement(1417005..1419050)
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AA seq
681 aa
AA seq
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MDFAKSILDHLNEAQKIAACHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLT
LTFTNKASKEMQERALKLLNNQAFIPPLLCTFHRFGLLFLRQHMSLLKRACDFSVLDSDE
VKTLCKQLKISGFRASISQIKNGMMDLNTQDSECYKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNEKLAKEISERYHYIMVDEYQDTNALQLEFLKRLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKVVKLETNYRSSAEILECANALISHNQHRHKKTLQSFKGSHK
SVICKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHAVAKKDDRFFIKRVLNKPPRGLGKITQELIFSLLDEEDLN
LEEALKLEAFKDKLNPKNEYALKKFMAMIGRLREAFGISVEKFCERFLEETNLLKSYEKE
DNYEEREGFVKELLSLVKEHFKTNPTHSLLDFLNESVLNVHNTENTRKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEELQLSYVKERSYFGRKIA
CLPSSFLEEAKLLQQNKPPKQNHPKNTPIKVGDLIRHKIFGTGRVLGVEKGLSGWCFKIN
CGGNVYDKISEKFVEKVDSEF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcaaaaagtattttagaccatttaaacgaagcgcaaaaaatcgctgcatgc
cacattcaaggaccattattgattttagcgggagctgggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggggcttgtggcgtgcctagcgagaacactttgacg
ctcactttcaccaataaagcgagcaaggaaatgcaagaaagggctttgaaattattgaac
aatcaagcgtttatccctcctttgctttgcactttccatcgttttggtttgttgttttta
agacaacacatgagccttttaaaaagggcgtgcgatttttcggtgctagatagcgatgag
gtgaaaacgctgtgcaaacagctcaaaatttcaggttttagagccagtatttctcaaatc
aaaaacggcatgatggatttaaacacgcaagatagcgaatgctataaagcgtatgagctt
tatcaaaacgctctcaaaaaagacaatttagtggattttgacgatttgctttttttaagc
cttaagattttgcaagacaatgaaaaacttgccaaagagattagcgaacgctaccattac
attatggtagatgaatatcaagacaccaacgccttgcaactagagtttttaaagaggttg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcaaagcatttatggtttt
aggggagcggatatttctaatattttaaatttttccaagcatttcaagggggctaaagtg
gtgaaattagaaactaactaccgctctagcgctgaaattttagaatgcgctaacgccctc
attagccacaaccaacaccgccacaaaaaaacgctccaaagttttaaaggctcgcataaa
agcgttatttgtaaagagtatttgacgcaaaaagaagagagcttagatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctattttgtatcgctta
aacgggcttagccgcagcattgaagagagtttgaacgctttgaatatcccttataggctt
attggggcggtgagtttctatgaaagagcggaggttaaagacgctctggcgttcatgcat
gcggtggctaaaaaagacgatcgcttttttatcaagcgcgttttaaacaagcccccaaga
ggtcttggcaagatcactcaagaattgattttttctcttttagatgaggaggatttgaat
ttagaagaagcgctaaaacttgaagcgtttaaagacaaactaaaccctaaaaacgaatac
gctttaaagaaattcatggccatgatagggcgactaagggaggcttttggaatttcagta
gagaagttttgcgagcgttttttagaagagactaatctgttaaaaagctatgaaaaagaa
gacaattacgaagaaagggagggctttgtcaaagagcttttaagtttagtgaaagagcat
tttaaaactaaccccacgcattccttactggattttttgaatgaaagcgtgctaaatgtc
cataatacagaaaacacgcgcaaagtgagttgcatgagcgtgcatatgagtaagggcttg
gaatttaagcatgtgtttgtgatcggtttagaagaagggtttttcccgcatagggggttt
aatcaagaaagcgatttagaagaagaaaggcgcttggcttatgtggcgatcactagggct
aaagaagaattgcaactttcttatgtgaaagagcgctcgtattttgggaggaaaatcgcc
tgtttgccctcttcatttttagaagaagccaagttgctccaacaaaataaaccccctaaa
caaaatcacccaaaaaacacgcccattaaagtgggggatttgattaggcataagattttt
ggcaccgggagggttttgggcgtagaaaaaggcttgagcggttggtgttttaaaatcaat
tgcggagggaatgtctatgataagatttcagaaaaatttgtagaaaaagtggatagcgag
ttttga
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