Herbaspirillum huttiense: E2K99_09470
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Entry
E2K99_09470 CDS
T05937
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hhf
Herbaspirillum huttiense
Pathway
hhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2K99_09470 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhf03019
]
E2K99_09470 (rnr)
03016 Transfer RNA biogenesis [BR:
hhf03016
]
E2K99_09470 (rnr)
Enzymes [BR:
hhf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E2K99_09470 (rnr)
Messenger RNA biogenesis [BR:
hhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E2K99_09470 (rnr)
Transfer RNA biogenesis [BR:
hhf03016
]
Prokaryotic type
tRNA degradation factors
E2K99_09470 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Rrp44_S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QBP75237
UniProt:
A0A4R8KFG9
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All DBs
Position
2124522..2127038
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AA seq
838 aa
AA seq
DB search
MSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD
RAGNYKLTHSPDFILGRVSAHRDGFGFLLPDEGADDLFLPEKEMQKVMHGDRVQARITGT
DRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKRIGHDVLLAGPPGKAKAGQVV
SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLASKLPSEV
KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN
DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ
FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID
FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG
PTKEKLTQLRTFLKQIGLTLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY
SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSTALNTSISPA
ARKAQALQRATDKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD
KLGEEFTGTIAGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ
LTDRVTVQVSRVDLDARKIDLALVNEPGIRTLIKNEAKRAENAARGKSGGGRQSADEAQP
AARGKRGAAKPAAAAAGSKPKGGAKAKAGAARTATARPGEADRKRAASKGYTKGKKKR
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaattcccctattccattcccagccgggaagagatcctcggcatcctgcgtact
tcctcgggcgcgcaaaacgctgccgccctggccgccgcgctcggcgtcaagccggaagaa
atggacggcctgacgcgccgcctcaacgccatggaacgcgacggccagatcaagccggat
cgcgccggcaactacaagctgacccactcgcccgacttcatcctgggccgcgtctccgcc
catcgtgatggcttcggtttcctgctgcccgatgaaggggccgatgacctgttcctgccc
gagaaggaaatgcagaaggtcatgcacggcgaccgcgtgcaggcccgcatcaccggcacc
gaccgccgtggccgtccggaaggcaccatcgtcgaagtggtggagcgcgccaacacccac
gtgatcggccgtctgctcaatgaaaacggcgtctgggtggtcgcccccgaagacaagcgc
atcggccacgacgtgctgctggccggcccgccgggcaaggccaaggccgggcaggtggtc
agcgtggaattgaccgaacatccttcccgttacacgcagcccgtgggcaagatcgtcgag
atcctgggcgatatcgacgaccccggcatggaaatcgaaatcgccgtgcgcaagtacggc
gtgccgcacgaattctcggaagccgccaagaagctggcttccaagctgcccagcgaagtc
aaggcggccgacctcaaggatcgcgtcgacctgcgtgacgtgccgctggtcaccatcgat
ggtgaggacgcgcgcgacttcgatgacgcggtctactgcgaacctgtcaagatcggccgc
accaagggctatcgcctgatcgtcgcgattgccgacgtgagccactacgtcaagcccaac
gacgcgctggacgtggacgcgctggagcgcagcacctcggtgtatttcccgcgccgggtg
atcccgatgctgccggaaaagctctccaacggcctttgctcgctgaacccggacgtggac
cgactgaccctggtgtgcgatgccgtcatcaccgccaagggcgagatcaaggcctaccag
ttctatccggccgtgatccactccgcagctcgcctgacctataccgaagtggcttcgatc
ctggccaataccaagggcccggaagcagcgcgccgcatcggcctggtgccgcacctgacg
cacctctacgaagtcttccaggcgctgctgacggcccgccaggcacgcggtgccatcgac
ttcgagaccaccgagacctacatcgtctgcaacgccgccggcaagatcgagaaaatcctg
ccgcgcacccgcaacgacgcgcaccgcctgatcgaggaatgcatgctggccgccaacgtc
tgcgcggccgacctgttgaagcgccacgatcacccggcgctctaccgcatccacgccggt
ccgaccaaggaaaagctgacgcagctgcgcaccttcctcaagcagatcggcctgaccctg
ggcggtggcgacacccccagcgcctccgattacgccgagctcatgcccaaggtcaaggcg
cgtccggatgcggtgctgatccagaccatgctgctgcgctcgatgcagcaggcggtctac
agcccggacaacatcggtcacttcggcctgtcctatgaatcctatgcgcacttcaccagc
ccgatccgccgctatcccgacctgctgacgcaccgtgcgatcaaggccgtgctgcaaggc
aagcgttacgagcccaagggtatcgacagcactgcgctgaacacctcgatctcgcccgcc
gcccgcaaggcgcaggcgttgcagcgcgccaccgacaaggcggccggcaagaagccgcgc
ggcgagagcgcactggcgatctgggaagcgctgggcctgcactgttcggccaatgagcgc
cgtgccgatgaggcttcgcgcgatgtggaagcctggctcaagtgctacttcatccgcgac
aagctgggcgaggaattcaccggcaccatcgccggcgtggccaccttcggcatcttcgtc
caactggatgcgctctacatcgaaggtttggtgcacgtcaccgaactgggtgcggattac
ttccagtacgacgaagcgcgccacgaactgcgcggcgaacgtaccggcattcgctaccag
ctgaccgaccgcgtcaccgtgcaggtcagccgcgtggacctggatgcccgcaagatcgac
ctggcactggtcaacgagccgggcatccgtaccctcatcaagaacgaagccaagcgcgct
gaaaacgccgcgcgcggcaagtccggtggcggcaggcagagtgccgatgaagctcagccg
gcagcccgtggcaagaggggtgcggccaagccagctgccgctgcagcgggcagcaagccc
aagggtggcgccaaggccaaggccggtgccgcgcgcaccgccacggcacgccccggcgaa
gctgaccgcaagcgcgctgcatccaagggctacaccaagggcaagaagaagcgatga
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