Hippoglossus hippoglossus (Atlantic halibut): 117775115
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Entry
117775115 CDS
T07778
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117775115 (col13a1)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117775115 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117775115
NCBI-ProteinID:
XP_034463869
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Position
15:complement(23042899..23158086)
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AA seq
751 aa
AA seq
DB search
MEQDQKWGVCGQTSEQWRSGSDQQEKKASHQPLWRYWRDLSGVTICIAVSVLCLGVCVVV
FVRASELQSRVWSLEQRDAQFSAWRVSLEQVEPITLGRLDQILEEKLAARLPKTREVREA
QHSCLCPPGPPGPPGRAGFPGDKGSMGIPGRMALKGRSGEKGAPGEPGLSIIGPRGPPGQ
PGTRGFPGFPGPIGLDGKSGQNGGKGDMGQRGPKGQPGELGPKGEKGVCGDYTHRDLFVQ
DLPLKTLAALRSSQSLMLKMLPITMRNMPPISPLILKRLKQGEPGAQGPPGLPGPPGPPG
LIGTGGTPGKPGEPGKPGKDPRLLPGLKGEPGVPGHKGDRGNVGPSGPEGHKGIKGDQGI
EGDEGKRGYPGERGEKGERGFPGAPGLKGQAGISGTPGIPGKRGYRGDKGQPSIAATGIK
GEPGSSGLPGLTGPKGEKGDTGVEGHAGDEGPAGPRGPPGPTGEPGKAEIQNNENDIRNI
PLMGPPGLPGPPGSPGITGLKGEVGLPGPPGLDGDKGPRGKPGEPGPSGPAGPLGPRGED
GVMGFPGPKGDMGPSGSPGLDGPTGEKGATGAPGSIGLPGAMGHKGEPGEVARSEMIYGP
PGPSGPPGPVGPAGSQGFSGPKGEPGIGIRGEKGASGHKGDKGDRGHLGLPGLIGPAGVS
GPAGPKGERGEKGDGGLPGPTGPQGIPGLVGPQALKGNRGERGKKGNRGAKGDKGDQGAP
GLDAPCPLGDDGLPVPGCWNKGQHPFQLAKK
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggatcagaagtggggagtctgtggacaaacgtctgagcagtggaggagtggc
agcgatcagcaggagaagaaagcttcacatcagcctctctggaggtactggagagatttg
tccggcgttacgatttgcatcgccgtgtccgtcctgtgccttggagtttgcgttgtggtt
tttgtgcgcgcctcggagctgcagtccagggtgtggagtctggagcagcgggacgcgcag
ttctccgcgtggagggtgtctctggagcaggtggagcccattaccctgggtagactggac
cagatcctggaggagaagcttgcagcacggctaccaaagacacgggaggtgagagaagct
caacacagctgcctttgtcccccaggacctccaggtcctcctggacgagcaggctttccg
ggtgacaaaggaagtatgggaataccagggagaatggccttaaaaggacgctcaggggag
aagggagcaccaggcgagccaggtctatctatcattggaccaagaggacctcctggacaa
cccggaacacgaggctttccaggctttccgggtccaattggtttggatggcaaatctggt
cagaacggagggaagggagacatgggtcagcgtggtcctaaaggacagccaggggaactt
ggacccaaaggagaaaagggcgtatgtggagactacacacaccgggacctctttgtgcag
gatcttccattgaaaaccctggctgccttgcgctccagtcagtctctgatgttaaagatg
ttgcccatcaccatgcgaaacatgcccccaataagccctctaatcttaaaacgcctcaag
cagggcgagcctggagcgcagggacccccaggacttccaggaccccctggacccccaggc
ttgattggaactggtggcacaccgggtaaacccggtgagccaggcaaaccaggaaaagac
ccgaggctcttaccaggactgaagggtgagccaggtgttccggggcataagggtgatcga
ggcaatgtaggcccatcaggtcctgaaggccataagggaattaaaggtgaccagggaatt
gagggagatgaaggaaagagaggttacccaggagagaggggcgagaagggagaacgaggt
ttcccaggcgctcctgggttaaagggtcaggctggcatctctggtacccctggcatccct
ggcaagaggggctacaggggtgataagggacagccaagcattgcagccacaggtattaaa
ggagaaccaggttcatcgggactgccaggcctaacgggacccaagggtgaaaagggtgat
acaggagtcgaggggcatgcaggtgatgaaggcccagctggaccaagaggtcctccaggc
ccaactggagagccaggaaaggctgaaattcaaaataacgaaaatgatattcgtaacata
ccgttgatgggtccccctggattacctggacctccagggtcccctggcatcacaggtctc
aagggcgaagtcggtctaccaggtccacctggactggacggcgataagggacccagaggg
aagccaggagagcctggtccttcaggcccagctggtcctttaggtcccagaggcgaggat
ggtgtcatgggcttcccgggtcccaagggagacatgggtccatctggatcacctggttta
gatggccctactggtgaaaagggggctacaggggcccctggctctattggattacctggc
gcaatgggtcataaaggcgaacctggagaagtagcgaggtcggaaatgatatatggtcct
ccagggccctcaggacctccaggaccagttggcccagcaggatcccaaggattttccggg
cctaagggagagccaggcatcggcatcagaggagaaaagggagcatcaggtcacaagggc
gacaagggagacagaggccatcttggactacctggtctaataggaccagcaggtgtgtca
gggccagcaggaccaaaaggagagagaggtgaaaagggagacggaggattaccaggacca
actgggcctcaaggcatccctggtttagtaggaccacaagcactcaaagggaaccgggga
gagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaaggagcacct
ggattagatgccccctgtccgttgggggacgatggcttacctgtaccaggatgctggaat
aaaggtcaacatcctttccaactggctaagaagtag
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