Hippoglossus hippoglossus (Atlantic halibut): 117777747
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Entry
117777747 CDS
T07778
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117777747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117777747
03041 Spliceosome [BR:
hhip03041
]
117777747
03036 Chromosome and associated proteins [BR:
hhip03036
]
117777747
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117777747
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117777747
mRNA cycle factors
Common to processing body (P body) and stress granule
117777747
Spliceosome [BR:
hhip03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117777747
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117777747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
117777747
NCBI-ProteinID:
XP_034468550
LinkDB
All DBs
Position
2:complement(6386511..6398447)
Genome browser
AA seq
729 aa
AA seq
DB search
MSHVAIENAHGLEQQLAVLDLSAADGQLGGNSSKEAKSGNAFAAGRQGVYAMAPPANFGW
DGGRNNFVNGYHDNRMAGNTFNRGPPRMERGRGGGGGYRGNRGGAFNPIIPAQPMGFGGF
ENKDAGGWNTAKDAYSNFGNNRGKSAFFNDRGNANRGRFEHGGFGGGGGGGGGNSRWVEE
SLNEGDWSKPTPRNERLENELFAASNTGINFEKYDDIPVEATGQNCPHHIESFQDVDMGE
IIMNNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPILSQIYNEGPGE
TTNAAKASGQENGKYGRRKQYPMSLVLAPTRELALQIYDEARKFAYRSKVRPCVVYGGAD
IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIV
EQDTMPHKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEES
DKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTLVFVETKKGADALEDFLYREGYAC
TSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHR
IGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTNRGRS
KRFAGGFGARDYRQTAAGANAGGFGGRGGRNQAGHGATRGFGGAGFGNFYTSDGYGGSYS
HSQVDWWGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccatcgagaatgcccacggcctggagcagcagctcgctgtcctcgac
ttgagtgctgcagatggacaacttggaggcaatagcagtaaggaggcaaaatcaggaaat
gccttcgccgctggtcgacaaggtgtctacgccatggcgcctccagccaacttcggttgg
gacggagggcgcaacaactttgttaatggctaccatgacaaccgcatggccgggaacaca
tttaatcggggcccgcctcgcatggagcggggaagaggcggcggaggcggttaccgtggt
aacagaggaggagccttcaaccccatcatcccagcacagccaatgggatttggtggcttc
gaaaacaaagatgcaggtggctggaacacagccaaggacgcctatagcaactttggtaac
aaccgagggaagtctgcattcttcaatgacaggggcaacgctaatagagggaggttcgag
cacggtggatttggtggtggtggtggaggaggtggaggaaacagccgctgggtggaggag
tccctaaatgaaggagattggtccaaaccaacaccacgtaacgagcgccttgaaaatgag
ctgttcgctgccagtaacacaggcattaactttgagaaatatgatgacattcctgttgag
gccacagggcagaactgcccccaccacattgagagcttccaagatgtggacatgggtgag
attatcatgaacaacatcgctctgagtcgctacaccagaccgactcctgtccagaaatac
gccattccaatcgtcaagtcaaagagagatctcatggcatgcgcacagaccggttctgga
aagactgcagcattcctgctgccgattctcagccagatctacaatgagggaccaggagaa
actacgaatgcagctaaagcctctggacaggagaatgggaagtacggacgtcgtaagcag
tacccaatgtctctggtactggctccaaccagagagctggctttgcagatatatgatgaa
gccaggaagtttgcctacaggtccaaagtgcgtccctgtgttgtgtatggaggagcagac
attggccagcagatcagagacctggagagaggctgccacctactggtggcgacaccagga
agactggtagacatgatggagaggggcaagatcggactggactactgcaactacctggtc
ctggatgaggcagatcgcatgttggacatgggattcgaaccgcagatcaggcgcattgtg
gagcaggacaccatgccacacaagggcatccggcaaaccatgatgttcagtgctaccttt
cctaaagagatccagatcctggccagggatttcctggaggagtacatcttcctggcagtg
ggcagagtgggttccacctcagagaacatcactcagaaagtggtgtgggtggaagagagc
gataagaggtctttcctcctggacctgctcagtgctacagtcatcccgagcgaggtacag
gacaatactggagacaacatagagaaacctggcaaggactcgttgactctggtttttgtg
gagaccaagaaaggtgccgatgccttggaggacttcctgtatcgggagggctacgcctgc
accagtatccatggtgaccgctcccagagagacagagaagaggccctgagccagttcaga
tcaggaaaatgccccattctggttgccacagcggtggcagctcggggtctggacatctcc
aacgtgaagcacgtaattaactttgatctgcccagcgacatagaggagtacgtccaccgt
atcggtcgtacaggaagagtcggaaacctgggactggccacatcgttcttcaatgataag
aacgggaacatcactaaagacctgctggacatccttgtagaggccaaacaggaagttccc
tcttggcttgagagcctggcgtatgaacaccagcataagagcaccaacagaggacgctct
aagaggttcgctggagggtttggagcacgtgattatcgtcagacggccgctggagcaaac
gccggagggttcggaggacgtggaggacgcaaccaggcaggacatggcgcaacccgaggc
tttggaggagctggatttggaaacttctacaccagtgacggctacggcggcagctactcg
cactctcaagttgactggtggggcaactag
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