Candidatus Pantoea carbekii: HHS_01560
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Entry
HHS_01560 CDS
T02865
Name
(GenBank) hypothetical protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hhs
Candidatus Pantoea carbekii
Pathway
hhs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HHS_01560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhs03400
]
HHS_01560
Enzymes [BR:
hhs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HHS_01560
DNA repair and recombination proteins [BR:
hhs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HHS_01560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
ShK
Motif
Other DBs
NCBI-ProteinID:
BAO00126
UniProt:
U3U1X6
LinkDB
All DBs
Position
223648..226269
Genome browser
AA seq
873 aa
AA seq
DB search
MFLEIDEFLEKDISLHNLIISKALQEIHSTVKKQKHLKAILSFNDLLSLLDDALKKTSGN
ELAQSIRQRFPVALIDEFQDTDPLQYRIFRALYSNQPSHALLLIGDPKQAIYGFRGADIF
TYIQARNEIKSHYTLDINWRSSSAMIDSVNQIFSRINNPFIFNDISFLPVKCAFENQKLT
FLLDNQPQPAFRFWLQPGNSCSINNYQKYMAQQCAASISVWLEAGQQQRAQLGKEKMLRP
IQASDITVLVRNHYEAHLICNALNQFNICSVYLSNRNSVYSTLEARELIWLLKAVLEPEC
ESTVRTALATSLFSFSALQLENLYQDIRYWDKLVNVFSEWQLTWQQYGLLPMLRQIMNKY
HLPENLLASKNGERRLTDLMHLGELLQEVSFKLDTQHALVRYLERKVASPNTPSIKEQQR
LEHDRCLVHIVTIHKSKGLQYPIVCLPFAVAFRELNTILTLMKSTDESFALAKQKRLAED
LRLLYVALTRSIYHCSVGIAPIVRNLRECKINKANVTTDLHLSALGYLLQQGKEATANQL
KVILDKISSNNPIFEVISSNIVGVEQNKQQKVKDNILLSARKITRQLCDPWCVTSYTKLV
HHHADILHQIIPNLDIDVTTEKNNFKKDNITSLTPHEFPRGTIAGTFLHELFKLLDFSQL
PTEQKLTQYLEKNGHSAYWQPMLRKWITDVVNVPLNMKGMTLSQISQHNRLTEMSFYLPI
NNLLKANDFNNILRKNDILSSLAPPLDFIQIQGMLRGFIDLVFRFEGKYYLLDYKSNWLG
TNSKAYNSKTIIETMINHRYDLQYQLYTLALHRYLQHHLVNYQYEENFGGVFYLFLRGIE
SDNFSNSSIFYTRPKYECIFQLDTLFRTKAMIQ
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
ttgtttttagaaattgacgagtttttggaaaaagatatttcattacataatctaattatt
agtaaagcattacaagaaatacatagtacagtaaaaaaacaaaaacacttaaaggcaata
ctcagttttaatgatttgcttagtttgctagatgatgctcttaaaaaaactagtggtaat
gaattggcacaatctattcgacagcgttttccagtagctctaattgatgaatttcaagat
actgatccattgcaataccgtatttttcgtgcattatattcaaatcagccttcgcatgca
ctattgctaattggtgatccaaaacaggctatctatgggtttcgtggtgcggacatcttt
acttatattcaggcacgaaatgaaataaaatcacattataccttggatattaactggcgc
tcttcgtcagctatgattgatagtgttaatcaaattttttctcgaattaataatccattt
atttttaatgatatttcttttttaccagtaaagtgcgcctttgagaatcaaaagctaact
tttcttttggataatcaaccacagccagcttttcgtttttggttacaacctggtaatagt
tgtagcattaataattatcaaaaatatatggcacagcagtgtgcagctagtattagtgtc
tggctagaagctggtcaacaacagcgtgctcaattgggtaaagagaaaatgctacggccg
attcaagcatctgatattaccgtactcgttcgaaaccattatgaagcgcatctaatatgc
aatgcacttaatcaatttaatatttgttctgtgtatctttcgaaccggaatagtgtttat
agcacactggaagctcgtgaattaatatggttattaaaagcagttttagaacctgaatgt
gaaagcacagtacgaactgctttagcaacttcgctattttcttttagcgctttacagctt
gagaatttatatcaagatatacgttattgggataaattagtaaatgtcttttcagaatgg
cagttaacatggcagcaatacggtttattacccatgcttcgtcaaattatgaataaatat
catttaccagaaaatttattagcatcaaaaaatggagaacgccgcttaactgatttaatg
catttaggagaattattgcaggaagtttcattcaaactagatacgcaacatgctttagtg
cgctatttagaacggaaagtagcatctccaaatactccatctattaaagaacaacaacgt
ttagaacatgatcgttgtctagtacatattgttacaattcacaaatctaaaggactgcaa
tatccaatagtatgcttaccgtttgctgtagcatttcgagaactgaatacaatcttaact
ttgatgaaatctactgatgaaagttttgcattagctaaacaaaaaagattggcagaagac
ttacgtttattgtatgtagcattaacacgttcaatctatcattgcagtgtaggtattgca
ccaattgttcgtaacttacgtgaatgtaaaattaacaaagcaaatgtaactactgattta
catctcagtgcgcttggttatttactacagcaaggtaaagaagccactgcaaatcagcta
aaggtaatactagataaaataagtagtaataatcctatttttgaagtaatatctagtaac
atagtaggcgtagagcaaaacaaacaacaaaaagttaaggataatattctgctgagcgct
cgtaaaataacgcgtcaactatgtgatccatggtgtgtgactagctatactaaattagta
catcatcatgctgatattttgcatcaaataataccaaatttagacatagatgttactaca
gaaaaaaataattttaaaaaagataacataacatcattaacccctcatgaatttcctcga
ggtactatagcaggtactttcttacacgaattatttaaattgctagatttctcacaactt
cctaccgaacagaaactaactcaatatttagagaaaaatggtcactctgcctattggcaa
ccaatgcttagaaaatggattacagacgttgttaatgtaccacttaacatgaaaggaatg
acgctttctcagatatctcagcataatcgattaacagagatgtccttttacttaccgatt
aataatttattgaaggcaaatgactttaataacatattaagaaaaaatgatattttatct
tctcttgccccaccacttgattttatacaaatacaaggtatgctgaggggatttatagat
ttagtttttcgatttgaaggtaaatattatttattagattataaatctaattggttaggt
acgaactctaaagcctataactctaaaactataatagagaccatgattaatcatcgatac
gatttacagtatcagctttataccttagcacttcatcgttatttacagcatcatcttgtt
aattatcaatatgaggaaaattttggaggtgtattttatttatttttacgtggtattgaa
agtgataatttttctaatagcagtatattttacacacgaccgaagtatgaatgtattttt
cagttagataccttatttcgtactaaggcaatgatacaatga
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