Herbaspirillum hiltneri: F506_01590
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Entry
F506_01590 CDS
T04039
Name
(GenBank) RNA polymerase subunit sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hht
Herbaspirillum hiltneri
Pathway
hht02020
Two-component system
hht02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F506_01590
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F506_01590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hht03021
]
F506_01590
Transcription machinery [BR:
hht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F506_01590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Xre-like-HTH
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AKZ61538
LinkDB
All DBs
Position
complement(347216..348697)
Genome browser
AA seq
493 aa
AA seq
DB search
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERLDDALDNSVRL
LADGAISSPPSAQADPVENTAASAAPAEGEAGDPQDSVVGDDHAGGDTDWSFDDVARTGK
TPDDEDSRPQLEAHDITLREHLQEQTRLTVRSLRDRALIELIVDAIDDHGYLEESLEEIH
ARLPEELEIELDELTIALKLLQSFDPAGIGARSASECLALQIRRLPKVAFVTRRLALTIV
EDYLALFAQRDFNKIKKALGCDDEDLREAQAVIRQCHPHPGAVFASGRSDYVVPDVIVKA
AKDGWQVLLNHDVMPRLRVNAMYANALKQTKGDGSLGSQLQEAKWLIKNMRQRFDTILRV
AQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELKYFF
GSHVATETGGEASSTAIRALIKQLIGAEDPKNPLSDSKIADMLAEQGMVVARRTVAKYRE
VLKIPPVNLRKSL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatccctccagcttcgcacctcccagcatctggcattgacgccgcagttgcag
cagtcgatccgtttgctgcagctgtcgacgctggagctgcaccaggaactggaacagatc
ctgtcggacaatccgctgctggaacgcctcgatgacgcgctcgacaattccgtgcggctg
ctggccgacggcgccatcagcagcccgccttcggcgcaggccgatccggtcgagaacacc
gcggccagcgccgccccggctgaaggcgaagccggcgatccgcaggacagcgtagtcggc
gacgaccacgccggcggcgacaccgactggagcttcgacgacgtcgcccgcaccggcaag
acgcccgacgacgaagattcgcgtccgcaactcgaagcgcatgacatcacgctgcgcgaa
catctgcaggagcagacgcgcctgacggtgcgcagcctgcgcgaccgcgcgctgatcgaa
ctgatcgtcgatgcgatcgatgaccatggctatctggaagagtcgctcgaagaaatccac
gcgcgcttgcccgaagaactggaaatcgaacttgacgaactgaccattgcgctgaagctg
ctgcagagcttcgacccggccggcatcggcgcacgcagcgcgtccgaatgcctggcgctg
cagatccggcgcttgccgaaagttgcctttgtcacacgccggttggcgctgacgatcgtc
gaagattatctggcgctgttcgcccagcgcgatttcaacaagatcaagaaagcgctcggc
tgcgacgatgaagacctgcgcgaagcgcaagccgtgattcgccagtgccatccgcatccc
ggcgccgtatttgcatcgggccgatccgactacgtggtgcccgatgtcattgtcaaggcg
gccaaggacggctggcaggttttgctcaaccacgacgtgatgccgcgactgcgcgtcaac
gccatgtatgccaatgcgctcaagcaaaccaagggcgacggatcgctcggttcgcagctg
caggaagccaagtggctgatcaagaatatgcggcaacgcttcgacacaattttgcgtgtc
gcccaggcaattgttgagaggcaacgcaactttttttcgcatggcgcagttgccatgcgc
ccccttgtgttgcgcgaaatagctgatacactaggtctacacgagagcactatttctcgt
gtaacgactcagaaatacatgctgactccgcatggcatgtttgagttgaaatacttcttc
ggcagccacgtcgcaacggaaacaggaggtgaagcttcctccactgcgatacgggctctc
atcaaacaactgataggagcagaagaccctaagaacccactctctgatagcaagattgca
gatatgttggcggaacagggcatggtggtggcgcgacggactgtcgcgaaataccgcgaa
gtgctcaaaatcccgccggtaaatctccgcaaatctctgtaa
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