Hathewaya histolytica: NCTC503_00739
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Entry
NCTC503_00739 CDS
T05971
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hhw
Hathewaya histolytica
Pathway
hhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC503_00739 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhw03019
]
NCTC503_00739 (rnr)
03016 Transfer RNA biogenesis [BR:
hhw03016
]
NCTC503_00739 (rnr)
Enzymes [BR:
hhw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC503_00739 (rnr)
Messenger RNA biogenesis [BR:
hhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC503_00739 (rnr)
Transfer RNA biogenesis [BR:
hhw03016
]
Prokaryotic type
tRNA degradation factors
NCTC503_00739 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
VTQ85302
UniProt:
A0A4U9R228
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All DBs
Position
1:749737..751959
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AA seq
740 aa
AA seq
DB search
MDNSIREILISFMTEKAYKPMTIKELAKIFNISKRDMKDFEKLLGYMEEDGQIIKTHTEY
YGIPERMGFMQGTFQGHSKGFGFVIIEGEEKDVFIPINAVNGAMNGDKVLVSIFKEEQKG
RKREGEIYKILKRENTVVIGSFQDSKNFGFVVPEDARIHQDIFIAKEKTKGATDGQIVVA
EITKWPDQNRRSPEGKVIEILGNKGDKGIDILTIIRKHKLPEKFSPKVEEYAANIEDKIP
EEEYEKRRDLRDILMVTIDGEDAKDLDDAVSIERLENGNYLLGVHIADVSHYVRDKNVLD
KEALKRGTSVYLIDRVVPMLPKKLSNGVCSLNPRVDRLALTCMMEIDDKGKVVSHEVFES
IIKTNERMTYTDVTKILRDNDEELIKKYDYLYDSFKAMGKLFEILNRKRTERGSIDFDFE
ECKIILDEIGRPVDVKPYERAIANRIIEEFMLVCNETIAEYMYWTKMPFVYRIHEDPDEE
KLAHFSEFVYNLGYTLKRGQKIYPRALQEILEEVKGKREEVVVSTLMLRSMMKAKYSPEC
IGHFGLAARYYCHFTSPIRRYPDLMIHRIIKEYINGKIDEKRMNRLRTEVGEAALQSSTR
ERAAMEVEREVDDLKKAEYMSYRIGKEFEGIVSSVTNFGMFVELPNTIEGLVHITDLNDD
YYVFDDQHLCLIGEHTKKMYKLGDPVKIVVSRVSLDTHEIYFELLNEEEEKAMDVVPSDE
DVEKVQKAIKSLKSEDEIYS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
ttggataatagtataagagagattttaattagttttatgacagaaaaggcatataagcct
atgaccataaaggaacttgcaaagatttttaatatctctaaaagggatatgaaagatttt
gagaagcttttaggatatatggaggaagatggacagattattaagacacatacagagtat
tatggtataccagagagaatgggctttatgcaaggtacattccaaggacattctaagggc
tttggatttgtaattattgaaggtgaagaaaaggatgtatttatccctataaatgctgtt
aatggtgctatgaacggtgataaggttcttgtatctatctttaaagaggagcaaaaaggg
aggaaaagagagggagaaatatataaaattctcaaacgtgaaaacacagtagttatagga
tctttccaagatagcaagaattttgggtttgtggttccagaagatgcaagaatccaccaa
gatatatttatagctaaagaaaagacaaagggtgcgacagatgggcaaatagtagtagct
gaaattacaaaatggcctgatcaaaatagaagaagccctgaaggtaaggtaatagagata
ttaggtaacaaaggtgataaaggtattgatattctaactattataagaaaacacaaatta
ccagaaaagttttctccaaaagtagaggaatatgcagctaacattgaagataaaatacca
gaagaggaatatgagaaaagaagagacttaagagatattcttatggtaactattgatgga
gaggatgcaaaagacttagatgatgctgtatccatagaaagattagaaaatgggaactat
cttctaggagttcacatagcagacgtatctcactatgtaagagataaaaatgtacttgat
aaagaagctcttaaaagagggacatctgtttatttaattgatagagtagtgcctatgcta
cctaaaaaattatctaatggagtttgtagtttaaatccaagagtagatagattagcttta
acttgtatgatggagatagatgataaagggaaagttgtatctcatgaagtttttgaaagt
attataaaaaccaatgaaagaatgacttatacagatgttacaaaaattttaagagacaat
gatgaagaattaattaaaaaatatgattatctatatgattcatttaaagctatgggcaaa
ttgtttgaaatcttaaatagaaagagaacagaaagaggaagtatagactttgattttgaa
gaatgtaaaatcatattagatgaaattggtagacctgtagatgtaaaaccttacgaaaga
gctattgcaaatagaattatagaagaatttatgttagtttgtaatgaaaccatagcagag
tatatgtactggactaagatgccatttgtgtatagaattcacgaagatccagatgaagaa
aagttagctcattttagtgaatttgtttataatttaggatacacattaaaacgtggacaa
aaaatatatccaagagctcttcaagagattctagaagaagttaaaggtaaaagagaagaa
gtagtagtaagtacccttatgttaagatctatgatgaaggctaagtattctcctgaatgc
ataggacactttggtctagcagcaagatattactgccactttacttcacctataagaaga
tatccagatttaatgattcatagaataattaaagaatatataaatggaaaaatagatgaa
aagagaatgaatagattaagaaccgaagttggtgaagcagcgcttcaatcttcaactaga
gaaagagcagctatggaagttgaaagagaagtagatgatctaaagaaagctgaatatatg
agttatagaataggaaaagagtttgaaggtatagtatcttctgttacaaactttggaatg
tttgtagaacttcctaatactatagaaggcttagtccatataactgacttaaatgacgac
tactatgtgtttgatgatcaacatttatgtctaattggagaacatactaaaaagatgtat
aaattaggtgatccagtaaaaatagtagtaagtagagtgagccttgatactcatgaaatt
tattttgaacttttaaatgaagaagaagaaaaagctatggatgtagttccaagtgatgag
gatgttgaaaaagttcaaaaagctataaagagtttaaaatcagaagatgaaatatactca
taa
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