Hydrogenovibrio marinus: HVMH_0256
Help
Entry
HVMH_0256 CDS
T06677
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hmar
Hydrogenovibrio marinus
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmar03032
]
HVMH_0256 (topA)
03400 DNA repair and recombination proteins [BR:
hmar03400
]
HVMH_0256 (topA)
Enzymes [BR:
hmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HVMH_0256 (topA)
DNA replication proteins [BR:
hmar03032
]
Prokaryotic type
DNA Topoisomerases
HVMH_0256 (topA)
DNA repair and recombination proteins [BR:
hmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HVMH_0256 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
BBN58662
LinkDB
All DBs
Position
287869..290307
Genome browser
AA seq
812 aa
AA seq
DB search
MTNLVIVESPAKAKTIEKYLGKGFTVRSSYGHIRDIQKKGMGIDIPNGFAPQYEISPDKK
KTVSELKKLAKTAETVWLATDEDREGEAIAWHLAEALNLNVAETKRIVFHEITQTAIQKA
IAEPRTVDMDLVDAQQARRILDRIVGFELSPVLWKKIRTGLSAGRVQSVAVRLIVERERE
IDAFESEYVFRLQGKLGLLDTQQNTVGEVDVKRNAAFDTEEEAESFLKMLSQGQLSVASL
EEKPAKKSPKPPFTTSTLQQEAASKLGFSVKQTMSVAQRLYESGKITYMRTDSLNLSEEA
LASASKVIASQYGDAFVHTRRYKTKKADAQEAHEAIRPTDFSVSEVSGERNEQRLYQLIW
RRAIASQMADARLKRTTVEIAISNMPAEKLVAKGEVIEFEGFLKVYQLDADNEEGMLPPM
TIGQALSLGALVVRQSYSRAPARYNEASLVRTLEEMGIGRPSTYAPTIDTIQARGYVVKE
DREGQPRNYRQLELTADGIDAETLTEMAGSEKNKLFPTDIAGIVTDFLVKHFGDVLDYQF
TAHVEDEFDEIAQGKESWQQMLQNFYQQFHPRVEAAEDVSREEAGQSRALGNDPTTGKPM
FVKIGRFGPYVQLGDGENDEKPTFASLVTGQKMDTIKLEEALELFKLPRVVGEAPEGFSA
SAIDGTVFSVEKGQEIIAKQGPFGPYLEYGPKKYAPIKGFDPLAITLEESMALIEAKIVA
EAEKIVRVFEGTDVVILKGRWGPYITDVTTKKNAKIAKTEDPQKLTLEECQKRLDEAPEP
KKRGRAAAKKTTAKKAPAKKVATKKAPAAKKS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatcttgtgattgtggagtcaccggccaaagccaagacgattgaaaagtatttg
ggcaaagggtttaccgtacgctcaagctacgggcatattcgtgacatccagaaaaaaggt
atggggattgatatccctaatggatttgctccgcaatacgagatttctccagacaaaaag
aaaacggtttccgaactgaaaaaattggccaagactgccgaaacggtttggctggcaacg
gatgaggaccgcgaaggggaagccatcgcatggcacctagcggaagccctgaacctgaat
gttgccgagaccaagcgtattgtttttcacgaaattacgcagaccgcgattcaaaaagcc
attgccgaacctcgtaccgttgatatggatttggtagatgcccagcaagcgcgacgcatt
ctagaccgaatcgtcgggtttgaactgtcgcctgtattgtggaaaaaaattcgcaccggg
ttgtcggcggggcgtgtgcaatcagtcgccgtgcgcttgattgtcgagcgtgaaagagaa
attgatgcgtttgaatccgagtatgttttccgtctgcaaggtaagctaggtttgctggat
actcaacagaacacggtaggtgaagtggatgtgaagcgcaatgcggcattcgacacggaa
gaagaagcggaaagcttcttgaaaatgttgtcgcaaggtcagttgagtgttgccagcttg
gaagaaaagcctgcgaaaaaatcgccaaaacccccttttaccacgtcgacgctacagcag
gaagcggcctctaaactgggtttttccgttaagcaaaccatgtcggttgcccagcgttta
tatgagtctgggaaaatcacctatatgcgtaccgactcgttgaatttgtcggaagaagca
ttggcaagtgcatcgaaagtgattgcgagccaatatggtgatgcttttgtccatactcgc
cgctataaaaccaaaaaagccgatgcccaagaagcgcatgaggccattcgtccgaccgat
ttttccgtgtctgaagtgtcaggcgaaagaaatgaacaacgactttaccaattgatctgg
cgccgtgctatagcttcgcaaatggcggatgccagactgaaacgcaccactgttgaaatc
gccatctccaatatgccggcggaaaagctagtagccaaaggcgaggtcatcgagtttgaa
ggcttcctaaaagtttatcagttggacgctgacaatgaagaaggtatgttgccgccaatg
actattggacaagctttgagcttgggggctttggttgtgcgtcagagttactctcgagca
ccagctcgctataacgaagccagcttggttcgtacccttgaagaaatggggattgggcgt
ccatctacctatgcaccgaccattgataccattcaggcgcgtggttatgtcgtgaaagaa
gatcgtgaaggtcagccaagaaattatcgtcaacttgaactgacggcagacggtattgat
gccgagaccttgaccgagatggcaggtagtgagaagaacaaacttttcccaaccgatatt
gctggtatcgttaccgatttcctagtgaagcacttcggtgatgtgttggattatcagttc
actgcccatgttgaagatgagttcgatgaaatcgcgcaaggcaaagagtcttggcagcag
atgttgcagaatttctatcagcaattccacccaagagtggaagccgctgaagacgtgtct
cgtgaagaagcgggtcaatcgcgtgcattggggaatgacccgacgaccggaaaaccgatg
tttgtcaaaatcggtcgattcggtccttacgtgcaattgggtgatggtgagaatgatgag
aagcctacctttgcgagcttggtaactgggcaaaaaatggacaccattaagcttgaagaa
gcgttggaattgttcaaactacctcgtgtggttggcgaagcgccggaaggttttagtgct
tctgccattgatggtaccgttttctcagtagaaaaaggtcaggaaattatcgccaaacaa
gggccttttggaccttatttggagtatggcccgaagaaatatgcgccaatcaaggggttc
gatcctctggcgattacgctggaagagtccatggcgttgattgaggccaaaatcgtagcg
gaagcggaaaaaatcgtacgtgtgtttgaaggtacggatgtagtgattttaaaaggtcgt
tgggggccttatatcacggatgtgacgacgaagaaaaatgcgaagattgccaaaactgaa
gaccctcaaaagctgacgttggaagagtgtcaaaaacgtttggacgaagcgcctgagcct
aaaaaacgtgggcgtgctgcagcgaagaaaacgacggctaaaaaggcacctgcgaaaaaa
gtggcgaccaaaaaagcaccggcagctaaaaagtcttaa
DBGET
integrated database retrieval system
