Hyphomicrobium sp. MC1: HYPMC_3913
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Entry
HYPMC_3913 CDS
T01557
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03030
DNA replication
hmc03410
Base excision repair
hmc03420
Nucleotide excision repair
hmc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYPMC_3913 (polA)
03410 Base excision repair
HYPMC_3913 (polA)
03420 Nucleotide excision repair
HYPMC_3913 (polA)
03440 Homologous recombination
HYPMC_3913 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmc03032
]
HYPMC_3913 (polA)
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_3913 (polA)
Enzymes [BR:
hmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYPMC_3913 (polA)
DNA replication proteins [BR:
hmc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYPMC_3913 (polA)
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HYPMC_3913 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYPMC_3913 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
Taq-exonuc
Peripla_BP_3
Motif
Other DBs
NCBI-ProteinID:
CCB67122
UniProt:
F8J6A0
LinkDB
All DBs
Position
complement(3742983..3745964)
Genome browser
AA seq
993 aa
AA seq
DB search
MQQTKIESPSASELAETVPVAKGSHIYLIDGSGYIFRAFHALPPLTRPSDGLPVGAVHGF
CAMLWKLLRETKISEAPTHFAVIFDAGRETFRNAIYPKYKAQRPPPPEELLPQFPLIRDA
VKAFNVACIERDGYEADDLIATYARLAVDAGGDVTIVSSDKDLMQLVRPGVTMFDGMKSK
RIGRDEVIEKFGVPPEKVIDVQALAGDSVDNVPGVPGIGIKTAAELITSYGDLDTLLARA
GEIKQPKRREKLIEFAEQARISRQLVLLKDDVPLDTVIEALGVREPHSDALLSFLRTMEF
NTLTKRIAEALGTEAPPPLAVSVGASVKAKPQTLSDKIEDLEEEAASEDATPAAAVAAGS
ALARGAQVDRSRYQTVTTRADLETWIAKAQSAGLVAFDTETSRLSATEADLVGFSLSVTP
GEACYVPVGHQSGGGDLFGDGNRPPQLAVAEAVALMKPLLEDPSVLKIGQNIKYDVLVLK
RYGVEVAPFDDTLLLSYALDGGRGQHGMDVLSERHLGHTCLSFSEVIEHAPGAKKADKSF
AGVPIDKATEYAAEDADITLRLWMALKPRLAAEHMATVYETLERPLVPVIVAMEHAGIKV
DRDILARLSSTFAQRTVQLEEEIYGLAGHKFNLGSPKQLGELLFDRLKLPGGKKTKTGQW
ETRANLLDDLAANEDLHGDARRLVNTMLEWRQLMKLKSTYTDALPTYINPETGRIHTSYA
LASTTTGRLASSEPNLQNIPIRNKEGREIRTAFIAEKGMKLVSADYSQIELRVLAHVADI
PQLKKAFADGLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYGISAFGLANQLSIS
REEAGDYIKTYFQRFPGIRDYMDATKKQAHAHGHVETIFGRRIHYPEINTKNPSMRGFLE
RAAINAPIQGSAADIIRRAMIRMPDALVAANLSSARMLLQVHDELVFEVPQDQADALIIT
ARHVMETAAEPAIKLSVPIHVDAKAADNWDEAH
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaacgaaaattgaatctccttcagcttcagaactggccgagaccgtaccggtc
gccaaaggaagccacatctatctgatcgatggatcgggctacattttccgcgcctttcat
gctttgccgccgctgacgcgaccgtcggacggcttgccggtcggcgccgtccacggtttc
tgcgccatgctttggaagctgctgcgcgagacgaaaatctccgaagcgccgacgcacttc
gcggtcatcttcgatgccgggcgcgagacgtttcgcaacgccatctatcccaagtacaag
gcgcagcggccgcccccgccggaagaactgttgccgcaattcccgttgatccgcgatgcc
gtcaaagccttcaatgtcgcttgcatcgagcgcgacggctacgaggccgacgatctgatc
gcgacttacgccaggctcgccgtcgatgccggtggcgacgttacgatcgtctcgtccgac
aaggatcttatgcaactcgtgcgtcctggcgtcacgatgttcgatggcatgaagtcgaaa
cgcatcggccgtgacgaggtgatcgagaagtttggcgttccgcctgagaaggtcatcgac
gtccaggcgctcgcgggggattccgtcgacaacgttcccggcgtgcccggtatcggcatc
aagaccgcggccgaactcatcaccagttacggcgatctcgatacgctgttggcgcgggcc
ggagaaatcaagcagccgaagcggcgcgaaaagctcatcgagttcgccgagcaagcccgc
atctcacgccaactcgtcttgctgaaggacgacgttccgctcgataccgtcatcgaggcg
ctgggcgtgcgagagccgcattcggatgcccttctgagcttcctgcgcacgatggaattc
aacacgctgaccaagcgtatcgccgaagcgctgggcaccgaagcgccgccgcctcttgcc
gtatcagtcggtgcgagcgtgaaagctaagccgcaaacgctttccgacaagatcgaagat
ttagaagaagaagctgcatcggaagacgccacgcccgccgctgcagtggcggccggtagc
gcgcttgcccgcggcgcgcaggtcgaccggtcgcgttatcagaccgtcacgacgcgcgcc
gacttggagacatggatcgccaaggcgcagagcgcaggcctcgtcgccttcgataccgaa
acctcgcggctgagcgcgacagaagccgacctcgtcggcttttcgttgtcggtgacgccg
ggcgaggcctgctacgttcccgtgggacatcagtccggcggcggcgatctctttggcgac
ggcaatcgtccgcctcagctggccgttgccgaggcggtcgcgctgatgaagccgctgctc
gaagacccatcggttttgaaaatcggacagaacatcaaatacgacgtgctggtcctgaag
cgttatggcgtcgaggtcgcgccgttcgacgatacgttgctgctctcttatgcgctcgac
ggcgggcgcggccagcacggcatggacgttctgtcggaacgccacctgggccacacatgc
ctgtcattttccgaagtcatcgagcacgcgccgggcgccaagaaggccgacaagtcgttc
gcgggcgttccaatcgacaaggcaaccgaatatgcggccgaagacgccgacatcacgctg
cgtctctggatggcgctcaagccgcgcctcgccgccgagcacatggcgacggtatacgag
acgcttgaacgaccgctcgttcccgtgatcgtcgcgatggagcacgcaggcatcaaggtc
gatcgcgatattctcgcgcgactttcaagtacattcgcgcagcgcactgtgcagctcgaa
gaagagatctacggcctcgctggtcacaagttcaatctcggctcgccgaaacaactcgga
gagctgctgttcgatcgcctgaagcttcccggcggcaagaaaacaaaaaccggccaatgg
gagacgcgcgccaacctgctcgatgatcttgctgccaacgaagaccttcacggcgacgcc
cgtcgcctcgtcaacacgatgctcgaatggcggcagttgatgaagctcaagtcgacgtac
accgacgcgctgccgacttatatcaatccagaaacgggccgcattcataccagctacgcg
ctcgcctccacgacgaccggacgcttggcatcgtccgagccgaacctgcagaacattccg
atccgcaacaaggaaggccgcgaaattcgcacggctttcattgctgaaaaaggcatgaag
ctcgtctcggcggactattcgcagatcgaattgcgcgtgctcgcccacgttgccgacatt
ccgcagttgaagaaggctttcgccgacggcctcgacattcacgccatgaccgcgtcagaa
atgttcggcgtgcccgtgaaggatatgccggccgaagttcgtcgccgcgccaaggcgatc
aacttcggcatcatttacggtatttcggcgttcggcctagcaaaccagctcagcatcagt
cgcgaggaagcaggcgattacatcaagacctacttccaacgcttccccggcattcgcgac
tatatggatgccacgaaaaagcaggcgcacgcgcacggccacgtcgaaacgattttcgga
cgccgcatccattatcccgagatcaacaccaagaacccatcgatgcgtggctttcttgag
cgtgccgcgattaacgcgccgatccaaggctccgccgccgacattatccgccgtgcgatg
atccgcatgccggatgctcttgtggccgcaaatctgtcatcggcgcggatgctgctgcag
gtccacgacgaactcgtcttcgaagttccgcaggatcaggcagacgcgctcatcataacc
gcgcgtcacgtaatggagaccgcggccgagcctgcgatcaagctctccgtcccgatccac
gtcgatgccaaggccgcagacaactgggatgaggcgcactaa
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