Haloferax mediterranei: HFX_1815
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Entry
HFX_1815 CDS
T02129
Symbol
ssl2
Name
(GenBank) putative DNA repair helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hme
Haloferax mediterranei
Pathway
hme03022
Basal transcription factors
hme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HFX_1815 (ssl2)
09124 Replication and repair
03420 Nucleotide excision repair
HFX_1815 (ssl2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hme03021
]
HFX_1815 (ssl2)
03400 DNA repair and recombination proteins [BR:
hme03400
]
HFX_1815 (ssl2)
Enzymes [BR:
hme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HFX_1815 (ssl2)
Transcription machinery [BR:
hme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HFX_1815 (ssl2)
DNA repair and recombination proteins [BR:
hme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HFX_1815 (ssl2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
ResIII
Helicase_C
SNF2-rel_dom
DEAD
SLFN-g3_helicase
AAA_30
AAA_22
MarR_2
HTH_20
Flavi_DEAD
TrmB
HTH_13
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
AFK19518
UniProt:
I3R5K8
LinkDB
All DBs
Position
complement(1738013..1740169)
Genome browser
AA seq
718 aa
AA seq
DB search
MTAEDEDREIPPDESDTSGTVSEPSDSTTEPSGSTTEPSGSTTEPSNDIADPSNSTLEPS
YSTTGDVLDRLADVTNASVPDDSQPADGVSLASFYEALEAEGRPVVTAQQVARRLDVTQA
DAMEGLDELVDAGRVQKVNVETDPLVWYPTEWGRLASRERVVLFPKRREIIVDNPTQYTR
AQLSQFAHLADTTGDREGRGRGYLYRIRQEDVWQAPFDDVQDLLAMLRSVLPERSPHLES
WVEDQWKRAHQFRLYSHEEGYTVLEAATESLMGNVALQKLDENQVYAPISDTESWVRDEE
IAAIKRILYDAGYPVEDDRDLEDGEELDVSLRVTLRDYQQDWVDRFLDQRAGVLVGPPGA
GKTIAGIGALGAVGGETLILVPSRELARQWREELRSTTDLSADQIGEYHGGSKEIRPVTI
ATYQTAGMDRHRSLFDSRRWGLIIYDEAHHIPSRVFQRSANLQSKHRLGLSATPIREDDK
EAEIFTLIGPPIGTDWGKLFDAGYVQEPEVEIRYVGWGDDMARNEWAASDGRERYMLAAM
NPGKIFEIRRLRARHADSKTLVFVDYLDQGKEISEALDVPFVSGETRHHRREAYFEAFRD
GDLDTLVISRIGDEGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPAGSALMYVLATRG
TSEEDFAQRQMQHLAGKGIRVRETSSDDRESTKHLSDDDDSPDSDGSGSDSPETELTE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgaggacgaggaccgagagatacccccagacgagtcagatacctcgggtact
gtctccgagccatcggattctactactgaaccgtcgggttccactactgaaccgtcgggt
tccactactgagccatcaaacgatatcgccgacccgtctaattctaccctcgaaccgtcg
tactctaccactggtgacgtactcgaccgcctcgccgacgtaaccaacgcctcggtacca
gacgacagccaaccggctgatggcgtctctctcgcctcgttctacgaagccctcgaagcg
gagggacgaccggtcgtgaccgcacaacaggttgctcgtcgcctcgacgtgacacaggcg
gatgcaatggagggactcgatgaacttgtcgacgctggtcgggtccagaaagtgaacgtc
gagactgacccgctcgtctggtatccaaccgagtggggacgactcgcatcgcgcgaacga
gtcgttctcttcccgaagcgcagggaaatcatcgtcgacaacccgacgcagtacacacga
gcacaactctcgcagttcgctcacctcgccgacaccaccggtgaccgcgaagggagaggc
cgagggtatctctaccgaatccgtcaagaggacgtgtggcaggcaccgttcgacgatgta
caggacctccttgcgatgcttcggtccgtcctccccgaacggtcgccacatctcgaatcg
tgggtcgaagaccaatggaagcgcgctcatcagttccgcctctactctcacgaggaggga
tacaccgtcctcgaagccgccaccgagagcctgatgggcaacgtcgcgcttcagaaactc
gatgagaatcaggtctacgcacctatctccgataccgagtcgtgggtcagagacgaggaa
atcgcggctatcaaacgcatcctctacgacgcagggtacccggtcgaagacgaccgagac
ctcgaggacggcgaggaactcgacgtctcgcttcgcgtcactctccgcgactatcaacaa
gactgggttgaccgcttcctcgaccagcgtgcaggcgttctcgtcggtccaccgggagcg
gggaaaacgattgcaggaatcggcgcgctcggtgctgtcggcggtgagaccctgattctc
gttcccagtcgcgaactcgctcgacagtggcgcgaggaattgcgctcgacgaccgacctc
tctgccgaccaaatcggcgagtaccacggtggctccaaagagatacgacccgtaaccatc
gcaacctaccagactgccgggatggaccgccatcgctcgctattcgactcgcgtcgctgg
gggctcatcatctacgacgaggcccaccacatcccaagtcgcgtcttccagcgaagtgcc
aacctccagtccaaacaccgcctcggcctctctgcgacccctatccgcgaggacgacaaa
gaagccgagattttcacgcttatcggcccgccaatcgggaccgattggggcaaactcttc
gacgcgggctacgttcaggagccggaagtcgagattcgctatgttggctggggagacgac
atggcgcgcaacgagtgggcagctagcgacgggcgcgaacgctacatgctcgccgcgatg
aatcccgggaagatattcgagattcgtcgactccgcgcccgccacgccgattcgaagaca
ctcgtcttcgtcgactacctcgatcaaggtaaggaaatttccgaggcacttgacgtgccg
ttcgtcagcggtgagacgagacaccaccgccgagaggcgtacttcgaagccttccgcgac
ggcgacttggacacgctcgtcatctcccgtatcggcgacgagggaatcgacctcccgaac
gccgaactcgccatcgtcgcctccggactcggtggttctcgtcggcagggttcccaacgc
gcgggtcggaccatgcgacccgccgggagcgcactcatgtacgtgctcgccactcgcgga
acgagcgaggaggacttcgcacagcggcagatgcagcacctcgcgggcaaagggattcgc
gtccgcgaaaccagttcggacgaccgtgagtcgaccaaacacctgagtgatgacgatgac
tcgcccgattcagacgggtcgggttcggactctccggagaccgagctaaccgagtga
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integrated database retrieval system
