Hydra vulgaris (swiftwater hydra): 100214296
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Entry
100214296 CDS
T01080
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
KO
K15544
RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:
3.1.3.16
]
Organism
hmg
Hydra vulgaris (swiftwater hydra)
Pathway
hmg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hmg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100214296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmg03021
]
100214296
03019 Messenger RNA biogenesis [BR:
hmg03019
]
100214296
Enzymes [BR:
hmg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
100214296
Transcription machinery [BR:
hmg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100214296
Messenger RNA biogenesis [BR:
hmg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100214296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssu72
Motif
Other DBs
NCBI-GeneID:
100214296
NCBI-ProteinID:
XP_002155087
UniProt:
T2M5H2
LinkDB
All DBs
Position
12:complement(24062661..24074536)
Genome browser
AA seq
202 aa
AA seq
DB search
MVLEKTMKRSKDLKIAVTCSSNQNRSMEAHGVLSKRGFNVRSYGSGSYVKLPGPTADKPN
IYHFNTPYDQMYQDLARKDPILYKQNGILHMLDRNRRIKRSPERFQDDKSSEFDIIITAE
EKVYDQVLEEFNRREPQSYRPVHIINIEIADNHEEATLGAFQICELCEKLEKPDDLDDDI
AEILEECERKFKRNILHTVAFY
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggtgcttgaaaaaacaatgaagagatcaaaagacttgaaaattgcggtgacgtgtagt
agtaaccaaaaccgaagtatggaagctcacggtgttttgagcaaacgaggttttaatgta
cgttcttatggttctggatcatatgtgaagttacctggacctactgctgataaaccaaac
atatatcattttaatacaccttatgatcaaatgtatcaagatcttgctcgtaaagatcct
atactgtataagcaaaatggcattcttcatatgttggatcgcaacagaagaataaaaaga
tctcccgaacgcttccaggatgataaaagttcggagtttgatattataattactgctgaa
gagaaagtttacgatcaggttctggaagagttcaataggcgagagcctcaatcatacaga
cctgtacatataataaatattgaaatagccgataatcatgaagaagcaactttaggcgca
tttcaaatttgtgagctttgtgaaaagctcgaaaaaccagacgacttggatgatgacatt
gcagaaatattggaagaatgcgaacgaaaatttaagcggaacattttacacactgttgcg
ttctactag
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