Halobacillus naozhouensis: P9989_20540
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Entry
P9989_20540 CDS
T09043
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hnz
Halobacillus naozhouensis
Pathway
hnz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P9989_20540 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hnz03400
]
P9989_20540 (ligD)
Enzymes [BR:
hnz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P9989_20540 (ligD)
DNA repair and recombination proteins [BR:
hnz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P9989_20540 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
HOOK_N
Nyv1_longin
Motif
Other DBs
NCBI-ProteinID:
WFT74702
LinkDB
All DBs
Position
4023069..4024841
Genome browser
AA seq
590 aa
AA seq
DB search
MSKPMLPTLSVDIPMGNEWVYEVKYDGFRAFLKWTESSITLISRNGQDLSDRFPEIIKAA
KEANPPDQLPVLLDGEIVILNTPYQANFPLLQKRGRMKNKTTINRIAEKRPATFMAFDIL
EAGNKLTSSIFTERKNQLNHLINTINYPSIQMVEVFEHKSDIHKLLHLHLGEGIVAKRKQ
SIYQKGVRTRQWLKIKQWRSVSGFLTSFDPKNDYYKVEIWQGNKRVPLGSFKHGLTSEQS
ETLETFFKENGTNWEISPSVCAAVNCLMAEGEEMREPTFNQFRFDLEPDDCTVSKRDWDL
LLFPEDVEITHPDKILWPEKQWSKQDYLMYIRAIAPYMMPFISDKKLTLIRYPHGVGDES
FFQKHRAEHSPDYVGEWQENDETFIVSNELSSLIWLSNQGALEFHIPFQKAAARDPDEIV
FDLDPPDREEFHLSIIAAQLLKHLLDQLGVHGFIKTSGNKGMQLHIPILEGSMSYEETRK
FTKSLVDLLVKESPDLFTIERLKKKRGRRLYLDYVQHAEGKTIISPYSARATSEGTVATP
LYWDEVTDELNPEDFTIKNVVKRVQEIGCPFQDYDKVRELQPIDVMRQLG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaaaccaatgctgccaacattgtctgtagatattcctatgggaaatgaatgggtg
tacgaagtgaaatatgacggttttcgagcgttccttaagtggacagaaagcagtattaca
ctcataagtagaaacggccaggatttatcggaccgttttcccgaaatcattaaagcggca
aaagaagcgaatcctcctgatcaactgcctgttttgcttgacggagagatcgtgattctc
aacaccccttatcaggcaaatttccctcttcttcaaaaacgaggacggatgaagaacaaa
acgactattaaccgtattgccgaaaaacgaccagccacatttatggcatttgatattctc
gaagctggaaacaaattgacttcatccatttttacagaaagaaaaaatcagcttaatcac
ctcatcaatactatcaattatccgtctattcaaatggtggaagtttttgaacataaatca
gatatccataaacttctccaccttcatttaggtgaaggaattgtggccaaacgcaagcag
agtatttaccaaaaaggggttcgaacgagacaatggcttaaaataaaacagtggcgctcc
gtatccggctttctaacctcattcgaccccaagaacgattattataaagtggaaatttgg
caagggaacaaacgtgtaccgttaggcagttttaagcatggattaacctcagagcagtcg
gagactcttgagactttcttcaaagaaaacgggactaattgggagatcagcccaagtgta
tgtgccgcggtcaactgcttaatggcagaaggcgaggaaatgcgcgaacctacctttaat
cagtttagatttgatctagagcctgacgactgtaccgtatccaaacgagattgggacctg
cttttgtttcctgaagatgtagaaatcacccatcctgacaaaatactgtggcctgaaaag
caatggagtaagcaggattaccttatgtacatcagagcgattgctccttatatgatgcct
tttataagtgataaaaaattgacgttaattcgctaccctcatggtgtgggcgatgaatcc
ttctttcagaagcatagggcagaacattctcctgattatgtaggtgagtggcaggaaaat
gacgaaacgttcatcgttagcaatgagctatcaagtttaatctggctaagcaatcaagga
gcactcgagtttcatatcccgtttcaaaaagcggcagccagggatccggatgaaattgtt
tttgaccttgatccacctgaccgcgaagaatttcatttatcgatcattgccgctcagctg
ttgaaacatttacttgaccagctaggtgttcacggttttataaaaacatccggaaataaa
ggaatgcagcttcatattcctatcctagaggggagtatgagctatgaggaaacgagaaaa
ttcactaaaagtttggtggatcttctcgtaaaggaaagtcctgatttatttacaattgag
cgattaaagaaaaaacgcggacgaagactttaccttgattatgtgcagcatgcagaaggg
aaaaccataatctccccttattcagccagagcaacatctgaaggaactgtagctacaccg
ctttattgggatgaagttactgacgaattaaatccagaagattttactatcaagaatgtt
gtaaaacgagttcaggaaattggctgtccgtttcaagattacgataaagtgcgagagctc
cagcccattgatgttatgagacaattaggatga
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