KEGG   Hoeflea sp. IMCC20628: IMCC20628_02615Help
Entry
IMCC20628_02615   CDS       T03926                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD polymerase module;ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hoe  Hoeflea sp. IMCC20628
Pathway
hoe03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hoe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IMCC20628_02615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hoe03400]
    IMCC20628_02615
Enzymes [BR:hoe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IMCC20628_02615
DNA repair and recombination proteins [BR:hoe03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IMCC20628_02615
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AKI01312
UniProt: A0A0F7PJ82
LinkDB All DBs
Position
complement(2703536..2706040)
Genome map
AA seq 834 aa AA seqDB search
MAVSAKRLADYAAKRDFSKTAEPSGDSPPKTSGRPVFVVQKHDARRLHYDFRLEWDGVLL
SWAVTKGPSADPSVKRLAVRTEDHPLDYGSFEGTIPAKQYGAGTVMLWDQGWWQPQDDFA
EGLKSGKLKFVLHGQRMQGKWTLVRMHTKEKRENWLLIKEHDSLEEDTEDGLIERYDTSI
ATGRSMVDIAAGKAAAKPKPKKPSKAKAKPGFNLATPKFRKPQLAKLSDHVPEGDDWLHE
TKFDGYRCLAALGKGGTKLYTRSGLDWTDRYAGLDEAFAELDCRSALIDGEVVSVSNGKG
SNFSALQRDLEQGRPVIFMAFDLLELDGEKLDKRPLIERKEALASLLAEQSKDTPIRYSE
HVVGHGPEVFKAIEKAGGEGIISKACDSVYAGSRSGSWLKIKTRLRQEFIVGGYSPSQAK
GRPFASLLVGSLENGVLRYRGRVGGGLGERDLDKLSSLMGTRTRQTSPFDEVPADIARAA
HWLTPDLVIEVDYAELTDQGSIRHGIFRGVREDKEASMVKLEKPDMPKEPATSEHEDGSF
LGVRISHPDRVVFADNGYTKGDVASYYAKAAERMLGFAGNRPVSLLRCPDGTDGDCFFQK
HAGQGFPDGIGSVDIEESSGKTEPYMVIEKPEGFVAAAQMGSIEFHIWGSRTDALEKPDR
LVFDLDPDEGLDFAEVKTAAKQLRKMLAEIGLDSLPMVTGGKGVHVIVPLRRIAEWETVA
FFARTIATHLAERHPDRYVATMSKAKRKGKIFIDWLRNERGATAVAPYSIRARQGAPVAI
PVTWPQLARLSSANSFEIPKALKRLDLPCPLQAMAASQSISHSVVEALEKLINR
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
atggcggtgtctgccaaaagacttgctgactatgcagccaagcgcgacttttccaaaacc
gccgagccaagcggcgacagcccgcccaagacctccggtcggccggtctttgtcgtgcag
aaacatgacgcgcgccgactgcattatgatttccggctggaatgggacggcgtgctgctc
agctgggccgtcaccaaggggccaagcgccgatccatcggtcaaacggctggcggttcgc
accgaggaccatccgctcgattatggcagtttcgaaggcaccattccggccaagcaatat
ggcgccggcacggtgatgctgtgggatcagggctggtggcagccgcaagatgatttcgcc
gaaggcctgaagtcaggaaaactgaaattcgttctgcatggtcagagaatgcagggcaag
tggaccttggtgcgcatgcacacgaaggaaaagcgcgagaactggctgctcatcaaggaa
cacgattcgctcgaagaggacaccgaagacggcctcattgaacgctatgacaccagcatc
gcaaccgggcgcagcatggttgacatcgcggccggcaaagctgctgccaaacctaagccg
aagaaacccagcaaggcgaaggccaagcccggattcaacctggccacgccaaaattccgc
aagccgcagcttgccaagctttccgatcatgttcccgagggcgatgactggctgcacgaa
accaagttcgacggctatcgctgcctggcggcactgggaaagggcgggaccaaactctac
acccgctccgggctggactggacagaccgctatgccggactggacgaggcctttgccgag
ctcgattgccgcagtgccctgatcgacggcgaggtggtgtccgtcagcaatggcaagggc
tcgaatttctccgcgcttcagcgcgatctggagcaggggaggccggttatcttcatggcc
ttcgacctgcttgagcttgatggcgaaaaactcgacaagcgcccgctgatcgagcgcaag
gaggcactggcgtcgctgcttgcagaacaatccaaggacacaccgatccgctactcggaa
catgtggtcgggcacggtccggaagtgttcaaggcgatcgagaaagcgggcggcgagggg
atcatctccaaggcgtgtgacagcgtttatgcgggaagccgaagcggcagctggttgaag
atcaagaccaggctgcgccaggaattcattgttggcggctattcgccgtcgcaagccaag
ggccggccgtttgcatcgctgctggttggttcgctcgaaaatggagttctgcgttaccgc
ggacgtgttggcggcggcctgggtgaacgcgatctcgacaagctgtcatccctgatggga
acgcgcacgcgccagacgagcccgttcgacgaagtgcctgccgacattgcccgggccgca
cattggctcacccccgatctggtgatcgaggtcgattatgccgaactgactgatcagggc
agtatccgccacggtattttccgtggcgtccgcgaagacaaggaggcctccatggtcaag
ctcgaaaaaccggacatgccgaaagaaccggccacctcggaacatgaggacgggagtttc
ctcggagtgcggatcagccatccagaccgggtggtgtttgctgataacggttacaccaag
ggcgacgtcgcaagctattacgccaaggcagcagagcggatgctgggctttgccggcaac
cggccagtctcgctgctgcgctgcccggacggaaccgatggcgattgcttcttccagaaa
catgccggccagggctttcccgatggcatcggcagtgtcgatatcgaggaaagttcgggc
aagaccgagccctatatggtgatcgagaaaccggagggattcgttgccgcagcacagatg
ggctcgatcgagtttcacatctggggatcacgcaccgatgcgctggaaaagcccgaccgt
ctcgtcttcgatctagaccccgacgaaggactggattttgccgaggtcaagaccgctgcc
aaacagctcagaaagatgctcgccgaaatcggcctcgacagtctgccaatggtcaccggc
ggcaagggcgttcatgtgatcgtgccgttgcggcgcattgccgaatgggagacggtggcc
tttttcgcccgcaccatcgccacccatctcgcagagcgccatcccgaccgctatgtcgcg
acgatgtcgaaggccaagcgcaagggcaagatcttcatcgactggttacgcaatgagcgc
ggcgcaacggcggtcgcgccctattcaatccgcgcccgccaaggtgcaccggtggcaatc
ccagtgacatggccgcaacttgcgcggctgtcatcggcaaactcattcgaaatccccaag
gcgctcaaacgtctggatctcccctgtccactgcaagcgatggccgcaagccaatcaatc
tcgcattctgttgtcgaggctctggaaaaactgatcaatcgatag

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