Helicobacter pylori B8: HPB8_487
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Entry
HPB8_487 CDS
T01262
Symbol
topA1
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpl
Helicobacter pylori B8
Brite
KEGG Orthology (KO) [BR:
hpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpl03032
]
HPB8_487 (topA1)
03400 DNA repair and recombination proteins [BR:
hpl03400
]
HPB8_487 (topA1)
Enzymes [BR:
hpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPB8_487 (topA1)
DNA replication proteins [BR:
hpl03032
]
Prokaryotic type
DNA Topoisomerases
HPB8_487 (topA1)
DNA repair and recombination proteins [BR:
hpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPB8_487 (topA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Motif
Other DBs
NCBI-ProteinID:
CBI66044
UniProt:
D7FCY7
LinkDB
All DBs
Position
457913..459946
Genome browser
AA seq
677 aa
AA seq
DB search
MKDSVIIIESPNKVEKIKQLTGAEVYATIGHFTNLVGVDIENNFACKFEIKEDKAKKINF
LINACRGKKVYIATDPDREGYGIGYQFYEKIKNVASEIYRAEFHEITPSGIESGLKNAVL
FSRSNTNLYQSFLGRIASDQVVGFALTSYLRKSLNLSELSTGRVQTPALALICQRDQEIR
DFDKLDDKEKVDYQIQAKIVYNEKEAIIKHVRANEKNELVDFKFKDKNEASQFLEDLKDG
LGSMSVLVSIKESLSNKEPKKPFTTSKLLSQASKALKIPTKEIAQLAQKLFEVGLITYHR
TDSEFLSPEYLKEHEAFFEPIYPSVYQYREYKAGKNSQAEAHEAIRITHPHALKDLEKVC
SNAKISEELALKLYQFIYANTICSQSRNALYNQYDCIFKIKSESFKLSFKLLKEKGFLEI
EELIQGKEELNKEEQESEIENFSLKENDSVPLKEVFIKKIEKPSPKPYKESAFIPLLESE
GIGRPSTYASFLDLLLKRKYVSIDTKTNAITPTSQGLEVISFFKKDKEVDFIALTSKDKS
KLGSTTKQFEECLDLIMRDEASYEKFMLEVISKLKSTAKFYQAQSADNNMPTDKQLELID
KICKDKKLQKPSQEILQNKEKCSDWIADHVKEKPSQKQLNLVKKICEECKLAMPTNKILN
DKFAISKWIDEHKKTKK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagcgtgattatcattgagagccctaataaggttgaaaagattaagcaacta
acaggtgcggaagtttatgcaactatagggcattttactaaccttgtaggcgtagatatt
gaaaataattttgcttgtaagtttgaaatcaaagaagacaaggctaaaaaaataaatttt
ttaatcaatgcttgtaggggcaaaaaagtctatatcgctactgaccctgatagagagggc
tatggtattggctatcaattttatgaaaaaattaaaaatgtagctagtgaaatttatcgt
gcagaatttcatgagatcacaccaagcggtattgaaagcggcttaaaaaatgcggtgtta
ttttctcgttctaacactaatttataccaatcattcttaggcaggattgcaagcgatcag
gttgttggatttgctctaacaagctatttaagaaaaagtttaaatcttagtgaattgagc
actggcagagtgcaaactccagctctagctttaatctgccaaagagatcaagaaataagg
gattttgataagttggatgataaagaaaaagtagattatcaaatccaagctaagattgtg
tacaatgaaaaagaagcgattattaagcatgtaagggcgaatgagaaaaacgaactagta
gattttaaatttaaagacaaaaatgaagcatctcaatttttagaagatttaaaagacgga
ttaggctctatgagtgttctagtttcaataaaagaaagtctatccaataaagagcctaaa
aaacctttcaccacttctaaacttttatcccaagctagtaaagccttaaaaatacctact
aaagaaatcgcacagcttgctcaaaagctctttgaagttggtctcatcacttatcacaga
actgatagtgaatttttaagtcctgagtatctcaaagagcatgaagcgttttttgaacct
atttatccgagtgtttatcaatatagggaatataaagctggcaaaaactcacaagctgaa
gcgcatgaagccataagaattacacatccgcatgctttaaaagacttagaaaaagtgtgc
agtaacgctaaaataagcgaagaattagcactgaagttgtatcaatttatttatgccaat
acaatttgttctcaaagtagaaacgccttatacaatcaatatgattgtatctttaaaatc
aaaagcgagagttttaagctctctttcaaacttttaaaagaaaagggttttttagagatt
gaagaactcattcaaggcaaagaagaacttaacaaggaagaacaagaaagtgaaatagaa
aacttttcattaaaagaaaatgatagtgtcccgttaaaagaagtttttattaaaaaaata
gaaaaacccagtcccaaaccttataaagaaagtgcctttattcccttattagaaagcgag
gggattggtcgtcctagcacttatgcgagcttcttagatcttcttttgaagcgtaaatat
gttagcattgatacaaaaactaacgctatcacccctactagtcaaggattagaagtgatt
tcatttttcaaaaaagataaagaagtggatttcatcgctcttacaagcaaggataagagc
aaattaggaagcactaccaaacaatttgaagaatgtttggatttgatcatgagagatgaa
gctagttatgaaaagttcatgcttgaagtcataagcaaattaaaaagtaccgccaagttt
tatcaagcgcaatctgctgacaacaacatgcctactgacaagcaacttgaactcatagac
aaaatctgtaaagataaaaaattacaaaaacccagtcaagagatcctgcagaacaaggaa
aaatgttctgattggattgcagatcatgttaaagaaaaacctagtcaaaaacaactaaat
ctggttaaaaaaatttgtgaagagtgtaaattggcaatgcccaccaataaaatattgaat
gacaaattcgctatctctaaatggattgatgaacacaaaaagacaaagaaatga
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