KEGG   Helicobacter pylori India7: HPIN_03075
Entry
HPIN_03075        CDS       T01918                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
hpn  Helicobacter pylori India7
Pathway
hpn02020  Two-component system
hpn02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:hpn00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HPIN_03075
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    HPIN_03075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hpn03021]
    HPIN_03075
Transcription machinery [BR:hpn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HPIN_03075
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID DUF3288
Other DBs
NCBI-ProteinID: ADU79853
UniProt: E8QFU1
LinkDB
Position
602002..603246
AA seq 414 aa
MAILRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRF
SAKNSSDHLENFAIASKSLFETLETQIIPPLFPTETSQKIAMDIISGLNSEGYFEENIEE
RAKILGVESEVYEKVRKRFSYLNPAGIGAKDVKESFLFQLESRELDNNELYEEARKIILN
LEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFILEVDNEIIVRLNDESY
PTISLEENRFKDSDYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKKLRPL
KLLDLANEFNYSVSTISRAISNKYLACEKGVFPIKHFFSTALDNSETSNAVIKDYLLELI
KNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIASSSERKKLYLMRA
NT seq 1245 nt   +upstreamnt  +downstreamnt
atggcgatcttacgcgcaaaccttagccctaaaaacaaattaaacgctaccttaaagggg
tggctccccattttacaaagcgagcttgaagatttagaagaagtgttgaaacaaaacgcc
ttggataaccccttaatcaaaattgaaaacaaacgcatcaaaaattttagcgatcgtttt
agcgctaaaaacagcagcgatcatttagaaaatttcgcaatcgcctctaaaagccttttt
gaaaccttagaaactcaaatcattccccccctctttcccactgaaacctctcaaaaaatc
gctatggatattatcagcgggttaaatagtgaagggtattttgaagaaaacattgaagaa
agggctaagattttaggagtagagagcgaagtttatgaaaaagtgcgcaagcgttttagt
taccttaatcccgctggcattggcgctaaagatgtgaaagagagctttttattccagtta
gagagtagggaattagacaataacgagctttatgaagaagcgcgaaaaatcattttgaat
ttagaaaaacaccacgaattttctaaagatttttattacgaaaaggctttaaagatttta
aaatcctttaaaaaccccccagccattgagtttttagaaaaagaaatagaagtcattcct
gagctttttattttagaagtggataatgaaatcatcgtgcgtttgaatgatgagagctat
ccgacaatcagtttggaagaaaatcgctttaaagatagcgattatttaaaagaaaaatta
aaagaggctaaagatttgattgatgcgctaaatttgagaaaagccacgatttataaaatc
ggcctcatgcttttagagtatcaatacgatttttttaagggtaaaaaattgcgccctttg
aaattgttggatttagccaatgagtttaactactctgtaagcacgatttcaagggccatt
tctaataaatatttggcatgcgaaaagggggttttccctatcaaacatttctttagcacc
gccttagacaatagcgagacttcaaacgctgtgattaaagactatcttttagaattgatc
aaaaacgaagacaaaaaagagcctttgagcgacgctaagattttagaactcattgaagaa
aaattccatttgaaaatggtaagaagaacgatcaccaaataccgccaactgctcaacatc
gcttcttcaagcgaaaggaaaaagctctatttgatgcgcgcttga

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