Halomonas profundus: LMS44_13090
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Entry
LMS44_13090 CDS
T08361
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
hpro
Halomonas profundus
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hpro03000
]
LMS44_13090
Transcription factors [BR:
hpro03000
]
Prokaryotic type
Helix-turn-helix
Other families
LMS44_13090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
HTH_28
HTH_23
HTH_29
AAA_16
AAA_5
Mg_chelatase
HTH_50
HTH_7
HTH_22
HTH_11
AAA
HTH_30
AAA_2
HTH_38
HTH_3
HTH_17
HTH_Tnp_ISL3
HTH_31
TetR_N
T2SSE
HTH_1
HTH_26
LZ_Tnp_IS481
IclR
TrmB
HTH_IclR
DUF815
ChuX_HutX
Motif
Other DBs
NCBI-ProteinID:
UEQ02234
LinkDB
All DBs
Position
2890081..2892063
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AA seq
660 aa
AA seq
DB search
MPTQSPLPARLQSVQRQHIEHIFQLGEGLEVPQLPAQQTIRRSWLRCLNEYQLDPTQPRP
ARVVPQQILIEHRESVDELLHVARAGVDQLYQQIAQLGYVLLLTDHRGITVEFRGDPNQD
QQLRKAGLYLGADWDERFAGTCAVGTCLHDRQAIICHRQEHFDASHISLTCTAAPIADPQ
GNVMAVLDISALQSPTQHESQNFSLSLVTLYARMIEDAYFLQRYRDCLMVRLDTSREFVH
VNGRGLIAIEENGQVIAANAVGRDLISEHQRRWPPWSAHHTPMLGELFECEIADVLSINS
ATDDQLRAFRARVDNTIYFISLLEPRRPRPAQQAQPLASSLPEPLVRLGADDPAMRKVQK
LAERLRNEASVNVLISGETGTGKEVVARALHDSGNRSKGPFIAVNCAAIPEALIESELFG
YEPGAFTGGRAKGMRGLIPQAHGGTLFLDEIGDMPLALQTRLLRVLAEREVMPLGANKPE
KVDIRVITATHRNIDSMIQQGEFREDLYYRLNGAQLRLPALRDRADKLYVIRRVFDDIIQ
ERASSQSPRLRADAISALLAYAWPGNIRQLKNALAFALATSENEEITVHDLPEQCLSQRI
TRQATPLPADAGSDSDHTLLEMLKEQHWNISAVARALGVSRPTIYRQMQRQDIVPPNWQG
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcctactcaatcgcctctgcctgcacggctgcaatccgtccagcgccagcatattgag
catattttccagctcggcgaaggcctggaagttccgcagctaccggcccagcaaaccatt
cggcgttcctggctgcgctgcctaaacgagtaccagctcgatcccacccagccacgccca
gcccgggtagtgccccagcaaatcctgattgagcaccgggaatccgtggatgaactcctg
catgtggcaagagccggggttgaccagctttatcagcaaattgcgcaactcggctacgtg
ctactgctcaccgaccaccgcgggataaccgttgagtttcgtggcgatcccaaccaagac
cagcaactgcgcaaagcaggcctttatctcggtgctgactgggacgaacgctttgcgggc
acctgtgccgtaggcacctgcctgcatgatcgccaggcgattatctgccaccgccaggag
cacttcgacgcctcgcatatttcgcttacctgtactgccgcccccatcgccgacccacaa
ggcaacgtcatggccgtgctggatatctccgcgctgcaatcgcctacccagcatgagagt
caaaatttcagcctctcgctggtaacgctctacgcacgcatgattgaggacgcctatttt
ctccagcgctaccgtgactgcctgatggtgcggctggatacctcgcgagagttcgtgcat
gtaaacgggcgcggactcatcgccattgaagagaacgggcaagtgattgctgccaacgca
gtgggtcgtgatctgataagtgaacaccagcgccgttggccaccctggtcagcccatcac
accccaatgctgggggagctattcgagtgcgagatcgccgatgtactcagcattaatagc
gccaccgacgatcaactgcgtgcttttcgcgccagggtcgataacacgatctactttatt
agcctgctggagccacgccgcccgcgccctgctcagcaagcacaacctctcgcctccagc
ctgccggaaccactggtacgcctcggcgccgacgaccccgccatgcgcaaagtgcagaaa
ctggctgaacggttgcgcaacgaagccagcgtcaatgtgctgattagcggagaaaccggc
accggcaaagaggtcgttgcccgtgctctgcatgacagcggcaaccgatctaaaggcccc
tttatcgcagtaaactgtgccgccattcccgaagcgctgatcgaaagcgagctgtttggt
tacgagcccggcgcctttaccggcgggcgcgccaaaggcatgcgcgggctgattccccaa
gcccacggcggcacactgtttttagatgaaatcggcgatatgccgctggccctgcaaacc
cgcctactgcgcgtactggccgagcgagaagtgatgcctcttggggccaataagcctgaa
aaggttgatattcgggtgattaccgccactcatcgcaatatcgattcgatgatccagcag
ggtgagttccgcgaagacctctattaccgccttaacggggctcaactgcgcctgcccgcg
ctacgcgaccgcgccgataagctctacgttatccgccgcgtatttgatgacatcatccag
gagcgagcctccagccaatcaccgcgcctgcgggccgatgccattagcgccctactagct
tacgcctggcccggtaatatccgtcagctaaagaatgcgctggcctttgcactggccacc
tcagaaaacgaagaaatcaccgttcatgacttacctgagcagtgcctaagccaacgcatc
actcggcaagcaactcccctgcctgcagacgctggtagcgacagcgatcacacattgctg
gaaatgctcaaggagcagcactggaacattagcgccgtggctcgcgctctcggggtttca
aggcccacgatataccggcaaatgcagcgccaagacatagtgccgccgaattggcagggg
tga
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