Helicobacter pylori 26695: HP_0348
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Entry
HP_0348 CDS
T00008
Name
(GenBank) single-stranded-DNA-specific exonuclease (recJ)
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpy
Helicobacter pylori 26695
Pathway
hpy03410
Base excision repair
hpy03430
Mismatch repair
hpy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HP_0348
03430 Mismatch repair
HP_0348
03440 Homologous recombination
HP_0348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpy03400
]
HP_0348
DNA repair and recombination proteins [BR:
hpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HP_0348
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HP_0348
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HP_0348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Fe-S_biosyn
GLUCM-like_C
Motif
Other DBs
NCBI-ProteinID:
AAD07405
UniProt:
O25115
LinkDB
All DBs
Position
complement(354891..356441)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERMASIAYNEKGFPSPFLFKDLKKAALKIIEAMRTNTEILVVGDYDADGV
ISSAIMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKMALDFLSANNSQDGYSLYERLKACNLKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVEKNNIISLFETLENFDFKVLPFCKTEPPLTLK
LKDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FSAERFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgcatggcttctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgcacaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctgctatcatggcaaaattttttgaaagcctgaactataagcatgtccgcatt
gcaatccctaatcgcttcatggatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattaacgcctttgaagccgcgcgattt
tgtaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtagcgttttatttgtgctatgggatccatcagcttttagga
aaagaaaaaagccattctagtgagttattatgtttagcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatgggttttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagtgatatttcttttaatatcgcccccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattctcaagatggctattct
ttgtatgaacgcttgaaagcatgcaatttgaagcgtaaaatgatccaacagcaggttttt
gaagaagcttttaagcatgcgatggttggagaaaaaattatcgtcgcttttaaggacaat
tggcatgagggagtgctggggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgctcgtagctcttcaaac
attgacttgattgacgctttgaatggggtttcttctttattgctcggctatggagggcat
aggcaagcttgcgggttgagcgttgaaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaagttttacctttttgtaaaacagagccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagattatagaaatgggcgaaccttatgggcaa
gaaaaccctgaacccctattccaagcaaaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttagcgctgagcggtttttgaaagcgggcgaaaaggtgagcgtgctttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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