Helicobacter pylori oki898: HPOKI898_02930
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Entry
HPOKI898_02930 CDS
T03729
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
hpyj
Helicobacter pylori oki898
Pathway
hpyj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI898_02930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyj03400
]
HPOKI898_02930
DNA repair and recombination proteins [BR:
hpyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI898_02930
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AHN44709
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Position
complement(579229..581028)
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AA seq
599 aa
AA seq
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MADLLSSLKNLPNSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSICNNEITPNHRASLR
IQMMVKQIAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPI
PLITRKILKQPGVKYFGPFTSGAKDILDSLYELLPLVQKKNCIKDKKACIFYQIERCKAP
CENKITKEEYLKIAKECLEMIENKDRLIKELELKMERLSNNLRFEEALIYRDRIAKIQKI
APFTCMDLAKLYDLDIFAFYGASNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQ
AIINHYQSHLPLMPEQILLNACSNEALKELQEFISHQYSKKIALSIPKKGDKLALIEIAM
KNAQEIFSQEKTSNEDLILEEARSLFNLECVPYRVEIFDISHHSNSQCVGGMVVYENNAF
QKNSYRRYHLKGSNEYTQMSELLTRRALDFAKEPPPNLWVIDGGRVQLNIALEILKSSGS
FVEVIAISKEKRDSKAYRSKGGAKDIIHTPSDTFKLLPSDKRLQWVQKLRDESHRYAINF
HRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASDQEKKRRFKKTNLKEKA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttattgtccagtttgaaaaaccttcctaatagcagtggcgtgtatcaatat
tttgataaaaaccgccaattgctctatatcggtaaagcgaaaaatttaaaaaagcgcatc
aaaagctatttttctatctgcaataatgaaatcacgcccaaccatcgcgcaagcttacga
atccaaatgatggtcaaacaaatcgcttttttagaaacgattttagtggaaaacgagcaa
gacgctttgattttggaaaattctttaatcaagcagctcaagcctaaatacaatattctt
ttaagagatgataaaacttacccttatatttacatggatttttccactgatttccctatc
cctttaatcacacgaaaaattttaaaacagcctggcgttaaatattttggcccttttacg
agcggggctaaggatattttggacagcttgtatgagttgctccctttagttcaaaagaaa
aattgcatcaaggataaaaaggcatgcatattttatcaaatagagcgttgcaaagcccca
tgcgagaataaaatcaccaaagaagagtatttaaaaatcgctaaagaatgtttagaaatg
attgaaaataaagacaggctcatcaaagagcttgaattgaaaatggagcgcctttccaat
aacttgcgttttgaagaagccctaatttacagggacaggattgcaaaaatccaaaaaatc
gcccctttcacttgcatggatttagccaaactctatgatttggacatttttgctttttat
ggcgcgagcaataaggcggtgttagtgaaaatgtttatgcgtgggggtaaaatcatttct
tcagcgtttgaaaaaatccactcccttaatgggtttgacactgatgaggcgatgaaacaa
gccattatcaaccattaccaatcgcatttgcctttgatgcctgaacaaattctattaaac
gcttgttctaatgaagcgcttaaagaattgcaagagtttatctctcatcaatactctaaa
aaaatcgctcttagcattcctaaaaagggcgataagctcgctttaatagaaatcgctatg
aaaaacgctcaagagatttttagccaagaaaaaacctctaatgaagatctgattttagaa
gaagcgcgatcgcttttcaatttagagtgcgtgccttatagggtggaaatctttgacata
agccaccattcaaacagccaatgcgtggggggaatggtcgtgtatgaaaacaatgcattc
caaaaaaactcttaccggcgctaccatttaaaaggctctaacgaatacactcaaatgagc
gaattgctcaccagaagagctttagactttgccaaagagccaccgcctaatttgtgggta
atagatggagggagggtgcaattaaacatcgctttagaaattttaaaaagcagcgggagt
tttgtagaagtgatcgctatttctaaagaaaaaagggattctaaggcttatcgctctaaa
gggggcgctaaagacattatccatacgcctagcgatacttttaaattgctccctagcgac
aaacgcttgcagtgggtgcaaaaattgcgcgatgaaagccaccggtatgcgataaacttc
catagatccactaaacttaaaaacatgaaacaaatcgctcttttaaaagaaaagggtata
ggagaagccagcgtgaaaaaattattggattattttgggagttttgaagcgatagaaaaa
gcgagcgatcaggaaaaaaaacgccgttttaaaaaaacgaatctaaaggaaaaggcatga
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