Acetivibrio saccincola: HVS_13175
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Entry
HVS_13175 CDS
T05223
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hsc
Acetivibrio saccincola
Pathway
hsc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HVS_13175 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsc03021
]
HVS_13175 (rpoC)
03400 DNA repair and recombination proteins [BR:
hsc03400
]
HVS_13175 (rpoC)
Enzymes [BR:
hsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HVS_13175 (rpoC)
Transcription machinery [BR:
hsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HVS_13175 (rpoC)
DNA repair and recombination proteins [BR:
hsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HVS_13175 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
PIN_12
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AUG58502
UniProt:
A0A2K9E450
LinkDB
All DBs
Position
complement(2904495..2907995)
Genome browser
AA seq
1166 aa
AA seq
DB search
MFELNNFDSIRIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPQKDWEC
HCGKYKRIRYRGIICDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKILYFAAYVVIDPGQTPLSKKQILTEKEYRDSIEKFGMKFTASMGAEAVKQLLE
EIDLDKLSQELRAELEETTGQKRVRTIKRLEVVEAFRQSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVNDELAHNIKSAKRMVERVKEEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRALKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPQDGKPVAVPTQDMVLGCYYMTIEKEGEKGEGRVFVSPEEAIMAYDNGDITLHSKIKVR
RERVFDGVLKTKLVETTVGRVLFNEAIPQDLGFVDRKNPETAFDFEVNFLVGKNELRKII
DRCIKVHGTTKTAVLLDHIKALGFKYSTKGAITISVSDMVIPEVKAKYIKETEEKIEKII
KQYKRGLISNEERYNSVIAAWTEASEKITQALIDNLDRFNPVYMMSQSGARGNINQIKQL
AGMRGLMADTQGKTIEVPIKANFREGLNVMEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREVDCGTRKGIEVSDIRDDAGEVIEPLHERLVGRYPAVPVVHPETGEIIVE
TDRLITDEDADRIIEAGIKKVRIRSVLTCHAEYGVCAKCYGANLATGEECNVGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIISEIPGTVKIVET
KKKREAVVTSEDGETKTYLIPYGSRLKVSDGDMVEAGDELTEGSVNPHDILKIKGLEGVE
AYLLHEVQRVYRLQGVEINDKHIEVIVRQMLRKMKVDDAGDTNLLPGSLVDVFDFEEENA
RIIAEGLRPATGKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKVDPLVGLKEN
VIIGKLIPAGTGMSRYKDISISTVIE
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgaactaaataattttgattcaataagaataggtttggcttctccggaaaagata
agagaatggtcccggggagaagtaaaaaaacctgagaccataaactatagaacgttaaag
cctgaaagagatggtctgttttgcgaaagaatatttggaccccagaaggactgggagtgc
cactgtggtaaatataagagaataagatacagaggcattatctgtgatagatgcggagtt
gaagtaacccgttcaaaggtaagaagggaaaggatggggcatattgagctggctgcacct
gtttctcacatatggtactttaagggcattcctagcagaatgggactattactggatatg
tctcccagggcgttggaaaaaatactgtactttgcagcatatgtagttatcgacccgggc
cagactcctttatccaaaaagcaaattcttactgagaaggaatatagagacagtatagaa
aaatttggaatgaaatttactgcatcaatgggtgcggaagctgttaagcagcttttagag
gaaatagatttagataagctttcccaggaacttagagcagagctggaagaaaccacaggt
caaaagagggtaaggacaattaagcgccttgaagtggttgaagcattcaggcagtcagga
aacagacctgagtggatgattttagatgtaattccggtaataccaccggaattaagacct
atggttcagctggatggtggaaggtttgctacttcagatctaaatgacctttacagaagg
gttataaacagaaataacaggttaaagagacttttagatttaggagcaccggacataatt
gtcaggaacgaaaagagaatgctccaggaagctgtagacgctttaatagacaacggaaga
aggggaagaccggtaacaggccccggaaacagacctttaaagtctttgtcagacatgttg
aagggtaagcaggggcgtttccgtcaaaacctattgggaaaacgtgttgactattcaggg
cgttccgttatagtggtaggtcctgagcttaaaatataccagtgcggtcttccaaaggaa
atggctttagagttatttaagccttttgtgatgaaaaagctggttaatgatgaacttgcc
cataatataaaaagtgcaaagagaatggtagagagggtaaaggaagaagtatgggacgta
ttggaggaagtaattaaagaacacccggtacttctaaaccgtgcaccaacccttcacagg
cttggaattcaggcttttgaacctgttcttgtggaaggtagggcattaaaacttcatcct
ttggtttgtactgcttataacgcagactttgacggtgaccagatggctgttcacgtacct
ctttctgctgaagcacaagcagaagcaaggtttttaatgctatctgccaacaacctgtta
aagccccaggatggaaaacctgttgctgtgcctacccaggacatggttttgggatgttat
tatatgaccattgaaaaagaaggagaaaaaggggaaggaagagtatttgtatctccggaa
gaagcaataatggcatatgacaacggtgatataacccttcattcaaaaattaaagtaaga
agggaaagggtatttgacggtgttctcaaaactaaattagttgagactacagttggaaga
gtactgtttaatgaagcaattccccaggatttaggatttgttgacagaaaaaatcctgaa
acagcttttgattttgaagtaaatttccttgttgggaaaaatgagcttagaaaaataatt
gacaggtgcataaaagtacatggaacaaccaagacagctgttcttttggaccatattaaa
gcattaggatttaaatattccacaaaaggtgctattaccataagtgtatctgatatggta
atacctgaagttaaagcaaaatatataaaagaaacagaagaaaagatagaaaagataatt
aagcagtataagagaggacttatttcaaatgaagagagatataattcagttatagcagct
tggactgaagcatctgaaaaaataacccaggctctcatagataatctggacagatttaac
cctgtttacatgatgtcacagtccggagcgagaggtaatataaaccaaattaagcagctt
gccggaatgaggggacttatggcagatacacagggtaagacaatagaggttccaataaag
gcaaacttccgtgagggactaaacgttatggaattctttatatcaactcacggagccaga
aagggattggcagacacagcattaagaactgctgactcaggttacctcacaagacgtctt
gttgacgtgagccaggatgttatagtaagagaagtagactgtggaacaagaaaaggaata
gaggtttcagatatcagggatgatgcaggggaagtaatagaaccactacatgaaagactg
gtgggaagataccctgctgtacctgttgttcatcctgaaacaggggaaataattgttgaa
actgacaggcttataaccgatgaagatgctgacaggataatagaagcaggcattaaaaaa
gtcagaatcagatcggtgctcacttgtcatgcagaatatggtgtttgtgcaaaatgttat
ggtgcaaaccttgcaacaggtgaagaatgtaatgtaggtgaagcagtaggaattattgct
gcacagtctataggtgaacctggaacacagcttaccatgagaacattccacacaggtggg
gttgcaggagatgacattacacaaggtcttccacgtgttgaggaattgtttgaagccaga
aagccaaaaggacttgcaattatatcagagataccgggaactgttaagattgttgagaca
aagaagaaaagagaagccgttgttacttcagaagatggagagacaaagacttatttgatt
ccatatggttccaggctgaaggtttctgacggggacatggttgaagccggtgacgaactt
acagaaggttccgttaaccctcatgatatactaaaaataaagggtcttgagggcgttgag
gcataccttcttcatgaagttcaaagggtttacaggcttcagggtgttgaaataaatgac
aagcatattgaagtaattgtaagacagatgctcagaaagatgaaagttgatgatgcggga
gatacaaatttattaccgggaagcctggtagatgtatttgactttgaagaagaaaatgca
agaataatagcagaaggcttaagaccagcaaccggaaagagagttttattaggaattaca
aaagcatcactggctaccgaatccttcttatctgctgcatcattccaggagacaacaaga
gtattaactgaggcagcaataaaaggaaaagtagatccattagtgggattaaaagaaaat
gttattataggtaaattaatacctgcaggaacaggtatgagcaggtacaaggatataagt
ataagtacggtaattgagtag
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integrated database retrieval system
