Herbaspirillum seropedicae SmR1: Hsero_2967
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Entry
Hsero_2967 CDS
T01268
Symbol
lpdA
Name
(GenBank) 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00010
Glycolysis / Gluconeogenesis
hse00020
Citrate cycle (TCA cycle)
hse00260
Glycine, serine and threonine metabolism
hse00280
Valine, leucine and isoleucine degradation
hse00310
Lysine degradation
hse00380
Tryptophan metabolism
hse00620
Pyruvate metabolism
hse00630
Glyoxylate and dicarboxylate metabolism
hse00640
Propanoate metabolism
hse00785
Lipoic acid metabolism
hse01100
Metabolic pathways
hse01110
Biosynthesis of secondary metabolites
hse01120
Microbial metabolism in diverse environments
hse01200
Carbon metabolism
hse01210
2-Oxocarboxylic acid metabolism
hse01240
Biosynthesis of cofactors
Module
hse_M00009
Citrate cycle (TCA cycle, Krebs cycle)
hse_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
hse_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
Hsero_2967 (lpdA)
00020 Citrate cycle (TCA cycle)
Hsero_2967 (lpdA)
00620 Pyruvate metabolism
Hsero_2967 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
Hsero_2967 (lpdA)
00640 Propanoate metabolism
Hsero_2967 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Hsero_2967 (lpdA)
00280 Valine, leucine and isoleucine degradation
Hsero_2967 (lpdA)
00310 Lysine degradation
Hsero_2967 (lpdA)
00380 Tryptophan metabolism
Hsero_2967 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
Hsero_2967 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hse04147
]
Hsero_2967 (lpdA)
Enzymes [BR:
hse01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
Hsero_2967 (lpdA)
Exosome [BR:
hse04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
Hsero_2967 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
AlaDh_PNT_C
FAD_oxidored
HI0933_like
GIDA
FAD_binding_2
NAD_binding_8
FAD_binding_3
3HCDH_N
DAO
2-Hacid_dh_C
Thi4
Lycopene_cycl
Motif
Other DBs
NCBI-ProteinID:
ADJ64455
UniProt:
D8IZW5
LinkDB
All DBs
Position
complement(3376898..3378325)
Genome browser
AA seq
475 aa
AA seq
DB search
MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL
LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVSFFHG
RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSIT
EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQGLA
VNLGVKIGAIKAGKNSVSVEYTDAKGDAHTGEFDKLIVSIGRTPNTIGLNAEGVGLKLDE
RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI
YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV
HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaattttgacgtggtcgtcatcggtggcggccctggcggttacatcgccgcc
atccgcgcagcgcaactgggcttcaacaccgcctgcatcgacgaatggaagaacgaaaag
ggcggccccgcaccgggcggcacctgcaccaacgtcggctgcatcccctccaaggcgctg
ctgcaatcctccgaacactatgagcacgccagccacggcttcgccgagcacggcatcgaa
gtcaagggcctgggcctgaacctggaaaagatgctgggccgcaagaataccgtggtcaag
cagaacaacgacggcatcctgtacctgttcaagaagaacaaggtcagcttcttccacggc
cgcggctccttcgtcaagggcgacgccaatggctacgaaatcaaggtcgcgggtgctgcc
gaagaaaccatcaccgccaagcacgtcatcgtcgctaccggctccaacgcccgcgcactg
ccgggcgccgagttcgatgaaaagctgatcctctccaacaccggcgcactgtccatcacc
gaagtgccgaagaagctgggcgtgatcggcgccggcgtgatcggcctggaaatgggttcg
gtctggcgtcgcctgggcgcggaagtgaccgtgctggaggcgctgccgaccttcctgggt
gcagtggacgagcagatcgccaaggaagcccagaagctgctgaccaagcaaggcctggcc
gtgaacctgggtgtgaagatcggcgccatcaaggctggcaagaacagcgtttccgtcgaa
tacaccgatgccaagggcgacgcccacaccggcgaattcgacaagctgatcgtctcgatc
ggccgtacccccaacaccattggcctcaacgccgaaggcgtgggcctgaagctggacgag
cgcggcttcatcgccgtggacggcgactgcaagaccaacctgcccaacgtgtgggcggtc
ggtgacgtggtccgtggtccgatgctggcccacaaggctgaggaagaaggcgttgccgtg
gccgagcgtatcgctggtcagcatggtcacgtcaacttcaacaccattccctgggtcatc
tacacctcgccggaaatcgcctgggtcggcaagaccgagcagcaactgaaggccgaaggc
gtgcagtacaaggccggtaccttcccgttcctggccaacggccgcgcccgtgcgctgggc
gatacctcgggcatggtgaagttcctggccgatgccaagaccgatgagatcctgggcgtg
cacatcgtcggcccgatggcctccgagctgatttccgaagccgtcgtggcgatggaattc
cgtgcttcctccgaagacatcgcccgtatctgccacgctcacccctcgctgtccgaagcg
accaaggaagcggctctggccgtcgacaagcgcgcattgaacttctga
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