Herbaspirillum seropedicae SmR1: Hsero_3158
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Entry
Hsero_3158 CDS
T01268
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B (SOS response excision nuclease DNA repair ATP-binding) protein
KO
K03702
excinuclease ABC subunit B
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hsero_3158 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_3158 (uvrB)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hsero_3158 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Hsero_3158 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
Microtub_bd
UvrD-helicase
P-loop_SecA
FlaG
Motif
Other DBs
NCBI-ProteinID:
ADJ64640
UniProt:
D8J171
LinkDB
All DBs
Position
3616058..3618139
Genome browser
AA seq
693 aa
AA seq
DB search
MAELTPINTELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT
GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY
VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL
RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI
DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI
EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAIMFLDESH
VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYEN
THADQVVEQVVRPTGLVDPIIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQL
TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSLVAILD
ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAIGETERRRAKQLAFNAAN
GIVPTGIKKEIRELIDGVFNPAQARTELLVAEEKKNYESMSEKQISKEIKRLEKQMQEHA
KNLEFEKAAAARDQLHLLKQQLFGAPGSDTAVA
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggctgaactgacccccatcaataccgagctggacgagagcaagttcgtcaccttcccc
gactcccccttcaagctctaccaggtgttcccgccggcgggcgaccagccggcggccatc
gacaagctggtcgagggggtcaacgacggcctgttctatcagaccctgctgggcgtgacc
ggctcgggcaagacctacaccatggccaacacgattgcccgcctgggccgcccggccatc
gtgttcgcccccaacaagacgctggcggcgcagctctacagcgagttccgcgagttcttc
ccgcacaatgcagtggagtacttcgtcagctactacgactactaccagcccgaagcctac
gtcccgcagcgcgacctgttcatcgagaaggattcctcgatcaacgaacatatcgaacag
atgcgcctgtcctgcaccaagtcgctgatggagcggcgcgacgtggtgatcgtggcgacc
gtctcggccatctacggtatcggtaaccccaacgaataccaccagatgatcctgaccctg
cgcgccaaggacaaggtctcgcagcgcgacgtcatcgcccgcctgatccagatgcagtac
acccgcaacgaagtggacttcgggcgcggcaccttccgcgtgcgcggcgacaccatcgac
gtattcccggccgaacacgccgagctggccgtgcgcatcgagaccttcgacgacgagatc
gacagcctgcagttgttcgatccgctcaccggccgcgtgcgccagaagatcccgcgcttc
accatctatcccggttcgcactacgtcacgccacgctcgaccgtgctgcgcgccatcgaa
accatcaaggaagagctggccgaacgcctggaattcttccgcaaggaaaacaagctcatc
gaagaacagcggctggagcagcgcacccgcttcgacatcgagatgatgaccgagatcggc
ttcaccaagggcatcgagaactactcgcgccacctctccggcgccaagccgggcgatcca
ccgcccacgctggtggattacctgcccaaggatgcgatcatgttcctggacgaatcgcac
gtcctgatcggccagttgaacggcatgtacaacggcgaccgcgcgcgcaaggtgaacctg
gtggactatggcttccggctgccctcggcgctggacaaccggcccctgaagttcgacgaa
ttcgaaaagaagatgcgccagaccatcttcgtctcggccaccccggccgactatgagaac
acccatgccgaccaggtggtggaacaggtggtgcgcccgaccggcctggtcgaccccatc
atcgcggtgcgcccggccaccacccaggtggacgacctgatgcaggagatcaacgaccgc
atcgccaaggacgaacgcgtgctggtgaccaccctgaccaagcgcatggccgagcagctg
accgagttcctctccgacaacggcatcaaggtgcgctacctgcacagcgacatcgatacc
gtggaacgcgtggaaatcatccgcgacctgcgcctgggcaccttcgacgtggtggtcggc
atcaacctgctgcgcgaaggcctggacattcccgaagtctcgctggtggcgatcctggat
gcggacaaggaaggcttcctgcgttccgaacgcagcctgatccagaccatcggccgcgcc
gcccgtaacctcaacggcatggccatcctctatggcgacgtggtgaccgattccatgcac
aaggccatcggcgaaaccgagcgccgccgcgccaagcagttggccttcaacgcagccaat
ggcatcgtgccgaccggcatcaagaaggaaatccgcgagctgatcgacggcgtcttcaac
ccggcccaggcgcgcacggaattgctggtggccgaagagaagaagaactacgaatccatg
agcgagaagcagatcagcaaggagatcaagcgcctggaaaagcagatgcaggaacacgcc
aagaacctggagttcgaaaaggccgcggctgcgcgcgaccagttgcatctgctcaagcag
caattgttcggcgctcccggcagcgataccgccgtggcctga
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