Herbaspirillum seropedicae SmR1: Hsero_4222
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Entry
Hsero_4222 CDS
T01268
Symbol
capD
Name
(GenBank) polysaccharide biosynthesis protein
KO
K24300
UDP-N-acetylglucosamine 4,6-dehydratase [EC:
4.2.1.135
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00541
O-Antigen nucleotide sugar biosynthesis
hse00552
Teichoic acid biosynthesis
hse01100
Metabolic pathways
hse01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
Hsero_4222 (capD)
00552 Teichoic acid biosynthesis
Hsero_4222 (capD)
Enzymes [BR:
hse01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.135 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining)
Hsero_4222 (capD)
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GFIT
Motif
Pfam:
Polysacc_synt_2
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
adh_short
CoA_binding_3
PglD_N
NAD_binding_10
KR
DapB_N
CoA_binding
OATP
Motif
Other DBs
NCBI-ProteinID:
ADJ65691
UniProt:
D8IUF9
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Position
4828803..4830749
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AA seq
648 aa
AA seq
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MKQPLFKLAIPILALPRATKRLVAVSVDMGLCVLTVWLAYYLRLGEFVALSGTALWAAGA
SVMLALPIFIVSGLYRAIFRYSGWPALLAVARAVGIYGLLYASIFTSISVPGVPRTVGII
QPILLLLFVGASRALARVWLGDQYLSILKQASRPKVLIYGAGSTGRQLVAAMASSHEMQV
VGFLDDDDRLHGHVLNGQPIYNPADLSSLASTLSISNVLLAMPSLSRKRRNEILAQIRTA
RVAVRTLPSVTDLAQGRVNVSDLRELDIDDLLGREPVMPNHILLAMNVRSKVVMVTGAGG
SIGSELCRQILAVGPSKLLLIEQSEFALYAIHQQLEEKLADRDIVLVPLLASVQDSERIR
EIMSTWHPDTVYHAAAYKHVPLVEHNPAEGIKNNVLGTLRTAQAATENGVADFVLISTDK
AVRPTNIMGASKRLAEMVLQAIAATSPGTKFSMVRFGNVLGSSGSVVPKFRQQIRDGGPI
TLTHADITRYFMTIPEASQLVIQAGAMAKGGDVFVLDMGQAVRIMDLARRMIELSGLTVK
DELNPEGDIAIEITGLRPGEKLYEELLIGDNPKPTSHSRIMKAHEEFIPWAELEARLSAL
EMALNVNDVGVIRLMMEKLVTGYTPSDEIVDWVYLEQEAEAQALGLAS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaacctctcttcaaactggccatacccatactggcattgccccgggccacaaag
cgcttggtcgccgtatcagtagatatgggcctgtgtgtattgaccgtctggctggcctac
tacctccgcctgggcgaattcgtggcgttgtcaggcactgccctgtgggcagccggcgcc
tcggtcatgctggccttgcccatcttcatcgtctccgggctgtaccgcgccatctttcgc
tacagcggctggccagccctgctggcagtggcgcgggcggtgggcatctacggtctgctg
tatgcctccatcttcacctccatcagcgtgccgggtgtgccgcgcacggtgggcatcatc
cagcctatcctgctgttgctgttcgtgggtgcatcgcgtgccctggcgcgcgtatggctg
ggtgaccagtacctgagcatcctcaagcaagccagccgccccaaggtactcatctacggc
gccggcagcaccggacgccagctggtcgccgccatggccagcagccatgagatgcaggtg
gtcggcttcctcgatgatgacgacaggctgcacggccatgtcctcaatggacagcccatc
tacaaccccgccgacctgtccagcctggcctccaccctgagcatcagtaacgtactgctg
gccatgcccagcctgagccgcaagcgccgcaatgaaatcctggcgcagatccgcaccgcc
cgggtggccgtacgcacgctgcccagcgtgaccgatctggcccagggacgcgtgaacgtc
tccgatctgcgcgagctggatatcgatgacctgctcggccgcgaacccgtcatgcccaac
cacatcctgctggccatgaacgtacgcagcaaggtggtcatggtcaccggtgcaggcggc
tccatcggcagtgaactgtgccgccagatcctggcggtcggtccgagcaagctgctgctg
atcgagcagagcgagttcgcgctctacgccatccaccagcagctcgaagaaaaactggcc
gaccgtgacatcgtgctggtccccctgctggcgtcggtgcaggacagcgaacgcatccgc
gagatcatgtcgacctggcatccggataccgtctatcatgctgcggcctacaagcacgtg
ccgctggtggagcacaacccggccgaaggcatcaagaacaatgtcctcggtacgctgcgc
acggcccaggctgccaccgagaatggcgtggccgacttcgtgctcatcagcaccgacaag
gcggtgcgccccaccaatatcatgggcgccagcaagcgcctggccgagatggtgctgcag
gccatcgcggccaccagccctggcaccaagttcagcatggtgcgcttcggcaatgtgctg
ggctcttccggctcggtggtgcccaagttccggcagcagatccgggatggcggtccgatc
acgctgacccacgccgacatcacccgctacttcatgaccattcccgaggcttcgcagttg
gtgatccaggccggtgcgatggccaagggtggcgacgtctttgtcctggacatgggccag
gcagtcaggatcatggacctggcgcggcgcatgatcgagctgtccggcctgacggtcaag
gatgagctcaatccggaaggcgatatcgccatcgagatcaccggattgcgcccgggtgaa
aaactgtatgaagaactgctgatcggcgacaaccccaagcctacctcgcactcgcggatc
atgaaggcgcacgaggagttcatcccctgggccgagctggaagccaggctcagtgcgctg
gaaatggcgctcaatgtgaatgacgtaggagtcatccgcctgatgatggaaaagctggtc
accggctatacgccctccgacgaaatcgtcgactgggtctacctggaacaggaagcagaa
gcacaagcgctgggcctggccagttga
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