Halobacillus shinanisalinarum: MUO14_10790
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Entry
MUO14_10790 CDS
T09504
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hshi
Halobacillus shinanisalinarum
Pathway
hshi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUO14_10790 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hshi03400
]
MUO14_10790 (ligD)
Enzymes [BR:
hshi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUO14_10790 (ligD)
DNA repair and recombination proteins [BR:
hshi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUO14_10790 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UOQ95368
LinkDB
All DBs
Position
2186208..2187980
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AA seq
590 aa
AA seq
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MNKPMLPTLSEDLPEGDEWIYEVKYDGYRAFLKWTEEGIQLVSRNGQDLSSRFPELIEAR
REATPPDQFPLILDGEIVILNTPYQANFPLLQKRGRMSNNTTIQQRAVQRPATFMAFDLL
ENGEGLNSSAYTKRKQQLKKIIDTIGSQRVQYVEEFDDASVIRRLLHLHLGEGIVAKQKN
SAYENGRTRKWLKYKQWRTVSGFLTSFNPQNEYYKMEIWNKDKRVPLGSFKHGLKSEQAQ
TLQTFFKEKGTNWRLAPSVCAAIHCLMAEDGEMREPVFDRFRFDLEPGDCTITNRDWDLL
LFPNDVEITHPDKTLWPDMQFSKRDYLMYIRAVAPYMIPFIRGKKLTLIRYPHGVGDKSF
FQKHRSDHAPNYVESWEEGDETFMISNGLSSLIWLSNQGALEFHIPFQKAGANDPDEIVF
DLDPPNREEFYLAVTAAQLLKHLLDKLEVHCFVKTSGNKGMQIHIPIQEGSMTYDETRNF
TKSLVDLLIKESPDLFTIERLKKKRGQRLYLDYVQHAEGKTIVSPYSARATSKGTVAAPV
FWNEVTTDLNPEVFTIKNVIKRVQDFGCPFDQYDRLRRAQPIDVMKQLGG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaaccaatgcttccaacattgtccgaggatttaccggagggcgacgagtggata
tatgaagtgaaatatgacggctatcgtgcttttcttaaatggacggaagaagggatccag
cttgtaagtaggaacggtcaggatttatcgagtcggttcccagagctcattgaggcgagg
cgagaagccactccaccagatcaatttccacttattcttgacggggagattgtcattctg
aataccccttatcaagccaacttcccccttttacagaaaagaggacgcatgagtaacaat
acaaccattcaacaacgtgccgtacaacgcccagctacatttatggctttcgaccttcta
gaaaacggagaaggtttaaattcttccgcgtacactaaaagaaagcagcagctaaaaaaa
attatcgataccatcggcagtcaaagagttcaatatgtagaggaatttgatgatgcatcc
gtgattcgccgccttcttcatcttcatttaggtgaaggaatcgttgcgaaacaaaagaac
agtgcatacgagaatggacgtacgagaaaatggctaaagtataaacaatggcgcaccgta
tcaggttttttaacctcattcaaccctcaaaatgaatattacaagatggaaatctggaac
aaagataaacgtgtcccattaggaagctttaagcatggtttaaaatctgaacaagcacag
acacttcagaccttttttaaagaaaagggaacgaactggaggctagcccccagcgtgtgt
gcagccattcattgtcttatggctgaagatggggaaatgcgcgagccagtttttgatcgg
tttcgctttgacttagagcctggcgactgtacaattactaatcgggattgggatctcctg
ttgtttcctaacgacgtagagattacccacccggataaaaccttatggcctgatatgcag
tttagcaagcgtgattacctaatgtatatcagggctgttgcaccttatatgattccgttt
ataaggggtaaaaagctgacattaatccgctatcctcatggggtcggcgataaatctttt
tttcaaaaacatcgatctgaccatgcacctaactatgtagagagctgggaggaaggtgat
gaaacctttatgataagtaatggtctctcaagcttgatatggttaagcaatcagggagca
cttgaatttcatatcccctttcaaaaagccggtgcaaatgatcctgatgagattgtcttt
gaccttgatccacccaatcgagaggaattttatcttgctgttacagctgcacagctgttg
aaacacttactagacaagcttgaggtccattgttttgttaaaacttctggaaacaaaggc
atgcagattcatattccgattcaagaaggaagcatgacatatgatgaaacgaggaatttt
acgaaaagtttagtcgacctgctcataaaagaaagccccgatctatttacaattgaacgg
ctaaagaaaaaacgcggacaacgcttatatctcgattatgttcagcatgctgagggcaaa
acgattgtctccccttattcagcgcgagccacttcgaaaggcacggtggctgcccctgtt
ttttggaatgaagttaccacagatttaaaccctgaagtcttcactattaaaaatgttata
aagcgagtccaggattttggctgtccttttgatcaatatgatcggttgcggcgtgcacaa
ccaattgatgtaatgaaacaattaggtggatga
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