Hippoglossus stenolepis (Pacific halibut): 118118790
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Entry
118118790 CDS
T08308
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118118790 (col13a1)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118118790 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118118790
NCBI-ProteinID:
XP_035028013
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Position
12:2530416..2638314
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AA seq
763 aa
AA seq
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MEQDQKWGVCGQTSEQWRSGSDQQEKKASHQPLWRYWRDLSGVTICIAVSVLCLGVCVVV
FVRASELQSRVWSLEQRDAQFSAWRVSLEQVEPITLGRLDQILEEKLAARLPKTREVREA
QHSCLCPPGPPGPPGRAGFPGDKGSMGIPGRMALKGRSGEKGAPGEPGLSIIGPRGPPGQ
PGTRGFPGFPGPIGLDGKSGQNGGKGDMGQRGPKGQPGELGPKGEKGVCGDYTHRDLFVQ
DLPLKTLAALRSSQSLMLKMLPITMRNMPPISPLILKRLKQGEPGAQGPPGLPGPPGPPG
LIGTGGTPGKPGEPGKPGKDPRLLPGLKGEPGVPGHKGDRGNVGPSGPEGHKGIKGDQGI
EGDEGKRGYPGERGEKGERGFPGAPGLKGQAGISGTPGIPGKRGYRGDKGQPSIAATGIK
GEPGSSGLPGLTGPKGEKGDTGVEGHAGDEGPAGPRGPPGPTGEPGKAEIQNNENDIRNI
PLMGPPGLPGPPGSPGITGLKGEVGLPGPPGLDGDKGPRGKPGEPGPSGPAGPLGPRGED
GVMGFPGPKGDMGPSGSPGLDGPTGEKGATGAPGSIGLPGAMGHKGEPGEVARSEMIYGP
PGPSGPPGPVGPAGSQGFSGPKGEPGIGIRGEKGASGHKGDKGDRGHLGLPGAHGLDGRP
GPVGLIGPAGVSGPAGPKGERGEKGDGGLPGPTGPQGIPGLVGPQALKGNRGERGKKGNR
GAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQHPFQLAKK
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggatcagaagtggggagtctgtggacaaacgtctgagcagtggaggagtggc
agcgatcagcaggagaagaaagcttcacatcagcctctctggaggtactggagagatttg
tccggcgttacgatttgcatcgccgtgtccgtcctgtgccttggagtttgcgttgtggtt
tttgtgcgcgcctcggagctgcagtccagggtgtggagtctggagcagcgggacgcgcag
ttctccgcgtggagggtgtctctggagcaggtggagcccattaccctgggtagactggac
cagatcctggaggagaagcttgcagcacggctaccaaagacacgggaggtgagagaagct
caacacagctgcctttgtcccccaggacctccaggtcctcctggacgagcaggctttccg
ggtgacaaaggaagtatgggaataccagggagaatggccttaaaaggacgctcaggggag
aagggagcaccaggcgagccaggtctatctatcattggaccaagaggacctcctggacaa
cccggaacacgaggctttccaggctttccgggtccaattggtttggatggcaaatctggt
cagaacggagggaagggagacatgggtcagcgtggtcctaaaggacagccaggggaactt
ggacccaaaggagaaaagggcgtatgtggagactacacacaccgggacctctttgtgcag
gatcttccattgaaaaccctggctgccttgcgctccagtcagtctctgatgttaaagatg
ttgcccatcaccatgcgaaacatgcccccaataagccctctaatcttaaaacgcctcaag
cagggcgagcctggagcgcagggacccccaggacttccaggaccccctggacccccaggc
ttgattggaactggtggcacaccgggtaaacccggtgagccaggcaaaccaggaaaagac
ccgaggctcttaccaggactgaagggtgagccaggtgttccagggcataagggtgatcga
ggcaatgtaggcccatcaggtcctgaaggccataagggaattaaaggtgaccagggaatt
gagggagatgaaggaaagagaggttacccaggagagaggggcgagaagggagaacgaggt
ttcccaggcgctcctgggttaaagggtcaggctggcatctctggtacccctggcatccct
ggcaagaggggctacaggggtgataagggacagccaagcattgcagccacaggtattaaa
ggagaaccaggttcatcgggactgccaggcctaacgggacccaagggtgaaaagggtgat
acaggagtcgaggggcatgcaggtgatgaaggcccagctggaccaagaggtcctccaggc
ccaactggagagccaggaaaggctgaaattcaaaataacgaaaatgatattcgcaacata
cctttgatgggtccccctggattacctggacctccagggtcccctggcatcacaggtctc
aagggtgaagtcggtctaccaggtccacctggactggacggcgataagggacccagaggg
aagccaggagagcctggtccttcaggcccagctggtcctctaggtcccagaggcgaggat
ggtgtcatgggcttcccgggtcccaagggagacatgggtccatctggatcacctggttta
gatggccctactggtgaaaagggggctacaggggcccctggctctattggattacctggc
gcaatgggtcataaaggcgaacctggagaagtagcgaggtcggaaatgatatatggtcct
ccagggccctcaggacctccaggaccagttggcccagcaggatcccaaggattttccggg
cctaagggagagccaggcatcggcatcagaggagaaaagggagcatcaggtcacaagggc
gacaagggagacagaggccatcttggactacctggggctcatgggttagacggcagaccg
ggtccagtgggtctaataggaccagcaggtgtgtcagggccagcaggaccaaaaggagag
agaggtgaaaagggagacggaggattaccaggaccaactgggcctcaaggcatccctggt
ttagtaggaccacaagcactcaaagggaaccggggagagaggggcaagaaaggcaacagg
ggggccaaaggggataagggagaccaaggagcacctggattagatgccccctgtccgttg
ggggacgatggcttacctgtaccaggatgctggaataaaggtcaacatcctttccaactg
gctaagaagtag
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