KEGG   Halopiger xanaduensis: Halxa_2706Help
Entry
Halxa_2706        CDS       T01532                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hxa  Halopiger xanaduensis
Pathway
hxa03030  DNA replication
hxa03410  Base excision repair
hxa03420  Nucleotide excision repair
hxa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hxa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Halxa_2706
   03410 Base excision repair
    Halxa_2706
   03420 Nucleotide excision repair
    Halxa_2706
   03430 Mismatch repair
    Halxa_2706
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hxa03032]
    Halxa_2706
   03400 DNA repair and recombination proteins [BR:hxa03400]
    Halxa_2706
Enzymes [BR:hxa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Halxa_2706
    6.5.1.6  DNA ligase (ATP or NAD+)
     Halxa_2706
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Halxa_2706
DNA replication proteins [BR:hxa03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Halxa_2706
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Halxa_2706
DNA repair and recombination proteins [BR:hxa03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Halxa_2706
   NER (nucleotide excision repair)
    Other NER factors
     Halxa_2706
   MMR (mismatch exicision repair)
    Other MMR factors
     Halxa_2706
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AEH37323
UniProt: F8D907
LinkDB All DBs
Position
complement(2033150..2034850)
Genome map
AA seq 566 aa AA seqDB search
MQFATFADRAAAIEAEPADLEIVAHVTDLLRDAEADLEIVARFVQGRVFPAWDSTTLDIG
PSACYEAIARAAGTNVDADDVEDRLAETGEIGDVAASYDFGGQQGLGAFTGGDGGEDDLT
VREVYETLCDLAAAEGSGSQDRKVDLLFGLFNRCSSEEARYLARLVLSEMRIGVGEGAVR
DAVAEAFDVPEEEVERALQVSNDYGEVARIARDEGLEGLEAIDLEIGRPVQTMLAQAGTV
TDALEEWDEAAVEWKYDGARIQLHHAPDDDTTRVFSRNMEEVTDALPEVLEYADETLEEP
VILDGEVVAVDDDGGPLPFQEVLKRFRRKHDVEKAREEVTVRPVFFDCLHAGGEDLLEEP
LTARHDRLRAVLAEDPDAVTETEDERDVEGLSLLWTTDDPDEIEAIDADALEAGHEGIML
KNPESTYSPGRRGKHWRKRKPDVETVDCVVTGAEWGEGRRANFLGTFELSVRDGDDLETV
GKVATGITDEKLEELTELLEPHIAAEDGQDVDLEPAVVFEVGYEEIQTSPTYSSGYALRF
PRFLAVRSDKEPEDADTLERVEALRS
NT seq 1701 nt NT seq  +upstreamnt  +downstreamnt
atgcagttcgccacgttcgccgaccgcgccgccgcgatcgaagccgagcccgcggacctc
gagatcgtcgcgcacgtcaccgacctgctccgcgacgcggaagccgacctcgagatcgtc
gcccggttcgtccagggacgggtcttccccgcgtgggactcgacgacgctcgacatcggc
ccgagcgcgtgctacgaggcgatcgcccgcgcagccgggacgaacgtcgacgccgacgac
gtcgaggaccggctcgcggagacgggcgagatcggcgacgtggcggccagctacgacttc
ggcggccagcagggcctgggcgcgttcaccggcggcgacggcggcgaggacgacctcacc
gtccgcgaagtctacgagaccctctgcgacctcgcggccgccgaaggatcgggcagccag
gaccgcaaggtcgacctcctcttcggcctctttaaccgctgctcgagcgaggaagcccgc
tacctcgcgcgactcgtcctctcggagatgcgcatcggcgtcggcgagggggccgtccga
gacgccgtcgccgaggccttcgacgtccccgaggaggaggtcgaacgggccctgcaggtc
tcgaacgactacggcgaggtcgcccgcatcgcccgcgacgagggactcgaggggctcgag
gcaatcgatctcgagatcggccggcccgtccagacgatgctcgcgcaggccggcaccgtc
accgacgcgctcgaggagtgggacgaggccgccgtggagtggaagtacgacggggctcgc
attcaactgcatcacgcccccgacgacgatacgacccgcgtcttctcccgcaacatggag
gaagtcaccgacgccctccccgaagtcctcgagtacgccgacgagacgctcgaggaaccg
gtcatcctcgacggcgaggtcgtcgccgtcgacgacgacggggggccgctccccttccag
gaggtgctcaagcggttccgccggaagcacgacgtcgagaaggcccgcgaggaggtcacc
gtccgacccgtcttcttcgactgtctgcacgcaggcggcgaggatctgctcgaggagccg
ctgacggcgcgccacgacaggctgcgggcggtgctggcggaggatcccgacgccgtaacc
gagacggaagacgagcgcgacgtcgaaggcctctccctgctctggaccaccgacgacccc
gacgaaatcgaggcgatcgacgccgacgccctcgaggccggtcacgaggggatcatgctc
aagaatcccgagtcgacgtactcgccgggccgccgggggaaacactggcgcaagcgcaag
cccgacgtcgagaccgtagactgcgtggtcaccggcgccgagtggggcgaaggtcggcgc
gcaaacttcctcgggaccttcgaactctcggtgcgggacggcgacgacttagagaccgtc
ggcaaggtcgcgaccggcatcacggacgagaagctcgaagagctgacggagctgctcgag
ccccacatcgccgcggaggacggccaagacgtcgacctcgagccggcggtcgtcttcgag
gtgggttacgaggagatccagacctcgccgacctactcgtcgggctatgcactgcgattc
ccgcgattcctggcggtccgctctgataaggaacccgaggacgcggacacgctcgagcgg
gtcgaggcgctgcggtcctga

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