Hydrogenophaga sp. PBC: Q5W_07205
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Entry
Q5W_07205 CDS
T04491
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03030
DNA replication
hyb03430
Mismatch repair
hyb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q5W_07205
03430 Mismatch repair
Q5W_07205
03440 Homologous recombination
Q5W_07205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyb03032
]
Q5W_07205
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_07205
Enzymes [BR:
hyb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q5W_07205
DNA replication proteins [BR:
hyb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Q5W_07205
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Q5W_07205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AOS78769
LinkDB
All DBs
Position
1491442..1495011
Genome browser
AA seq
1189 aa
AA seq
DB search
MFVHLRLHTEFSIVDGTNRIDDVVAAAAADGQPALAITDLNNLFGAVKFYRAGRDAGVKP
IIGAEVLLQGFTDETPNAMPGAHQPPLPRVLLLVQDKQGYLNLSELLARAWTRNVVRDQA
VLKREWLEELSAGLILLAGAQAGPVGQALLAGDAQRASDNALTLAAMFPHRFYIELQRAG
RADDERHVVAAAQLAARLRLPVVATHPVQFLGPDDYESHEARVCIAEGEILANNRRVRRF
TREQWFKPAADMAALFADLPSAVANTAEIAKRCNLTLVLGKPQLPNFPTPLIDGVPMPME
DFFRQSSFEGLEERLAHLYPDAAERDKQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIN
WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQG
NRDRVIDYVKQKYGKDAVSQIATFGTMAARAAIRDVGRVLDLSYGFCDGISKLVPNKPGM
SVTLQYPPVPKKEGDKNNYALEMEPVLAERVRQEEDVKTLIELAQKLEGMARNVGMHAGG
VLIAPGKLTDFCPLYAQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIVK
RHKGQENFRFEDVRLDDPKVYALFSRGQTEAVFQFESRGMQGMLRDAKPTRLEDLIALNA
LYRPGPMDLIPSFVARKHGREVVEYPHPAVADMLSETYGIMVYQEQVMQTAQILGGYSLG
GADLLRRAMGKKKAEEMAEHREKFRAGALKTHNIPQDKADEVFDLMEKFAGYGFNKSHAA
AYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGLAFEPPDVNRGVYR
FEPVTDKLIRYGLGAIKGTGQQAIEAIVAAREGRGEGPNGQETGPFKSLFDFCLRVDRTR
INKRTVEALIKAGAFDALHLNRAELLATLDIAFEYAATTQANANQGGLFDMLGGDDHGSS
TQEPDLVATMPWGVKEKLTLEKSAIGFYFSGHLFDEVEREVRRFARTRLVDVVDSRDPVI
LAGIVTDFRVINGQRGKLALFKIDDKTGVLETSADENLINAHRALLKDDELIVVQAVAQP
DRFSGGLRLKIQQVWDLASARCRFGKYLRVAVNGHAPSVAQLVREFPPKREMSDQGEFVR
GLPVRLALQRDGARCELQLDDRALFFPTDAALASWTAQAHEQRAEIVFD
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgttcgttcacctgcgcctgcacaccgagttttccatcgtcgacggcaccaaccgcatc
gacgacgtcgtggccgctgcggccgccgacggccagcccgcgctggccatcaccgacctc
aacaacctcttcggcgccgtcaagttctaccgggccgggcgcgacgccggcgtcaagccc
atcatcggcgccgaggtgctgctgcagggcttcaccgacgagaccccgaacgccatgccc
ggcgcccaccagccaccgctgccgcgcgtgttgctgctggtgcaggacaagcagggctac
ctcaacctcagcgagctgctggcgcgcgcctggacgcgcaacgtggtgcgcgaccaggcc
gtgctcaagcgcgagtggctggaggaactcagcgcgggcctgatcctgctggctggcgcg
caggctggcccggtggggcaggcgctgctggccggcgacgcgcagcgcgccagcgacaac
gccctgacgttggcggcgatgttcccgcaccgcttctacatcgagctgcaacgcgccggc
cgcgccgatgacgagcgccacgtggtggccgccgcgcaactggccgcacgcctgcgcctg
ccggtggtggccacgcacccggtgcagttcctggggcccgacgactacgagtcgcacgag
gcgcgcgtgtgcattgccgagggcgagatcctggccaacaaccggcgcgtgcgccgattc
acgcgcgagcagtggttcaagcccgcggccgacatggccgcgctgttcgccgatctgcca
tccgccgtggccaacacggccgagatcgcgaaacgctgcaacctcacgctggtgctgggc
aaaccgcagttgcccaactttcccacgccgctcatcgatggcgtgcccatgccgatggag
gatttcttccgccagtcctccttcgaggggctggaagaacgtctggcgcacctctacccc
gacgccgccgagcgcgacaagcagcgcccgcgctacgtggagcgcctggagttcgagatc
ggcaccatcctcaagatgggcttcccgggctacttcctgatcgtgggtgacttcatcaac
tgggccaagaacaacggctgcccggtgggaccgggccgcggctcgggcgcgggctcgctg
gtcgcctatgcgttgaagatcaccgacctcgacccgctgcaatacaacctgctgttcgag
cgcttcctgaacccggagcgggtgtccatgcccgacttcgacatcgacttctgccagggc
aaccgagaccgggtcatcgactacgtcaagcagaagtacggcaaggacgcggtgagccag
atcgccaccttcggcaccatggccgcgcgcgccgccattcgcgacgtgggccgcgtgctc
gacctgtcctacggcttctgcgacggcatctccaagctggtgcccaacaagcccggcatg
agcgtgacgctgcagtacccgcccgtgcccaagaaagagggcgacaagaacaactacgcg
ctggagatggagccggtgctggctgagcgcgtgcgccaggaagaggacgtcaagacgctg
atcgagctggcgcagaagctggaaggcatggcgcgcaacgtgggcatgcacgccggtggc
gtgctcatcgcgccgggcaagctcaccgacttctgcccgttgtacgcgcagccgggcagc
gaatcggccgtgagccagtacgacaaggacgacgtggaggccatcggcctggtgaagttc
gacttcctgggcctggccacgctcaccatcctggagatcgcgcgcgagttcatcgtcaag
cgccacaaggggcaggagaactttcgcttcgaggacgtgcggctggacgaccccaaggtt
tacgccttgttctcgcgcggccagacggaagcggtgttccagtttgaaagccgcggcatg
cagggcatgctgcgcgacgccaagcccacgcgcctggaggacctgatcgccctgaacgcg
ctttaccgcccgggcccgatggacctgatccccagcttcgtggcgcgcaagcacgggcgc
gaggtggtggagtacccgcacccggccgtggccgacatgctcagcgagacctacggaatc
atggtctaccaggagcaggtgatgcagacggcgcagatcctgggcggctactcgctcggt
ggcgccgacctgctgcgccgcgccatgggcaagaagaaggccgaggagatggccgagcac
cgcgagaaattccgcgccggtgcgctcaagacgcacaacatcccgcaggacaaggccgac
gaggtcttcgacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcc
gcgtactcgctgctggcgtaccacacgggttggctcaaggtccattacacggccgagttc
ttctgcgcgaacatgaccgtggagatggacgacaccgacaagctcaaggtgttgttcgag
gacgcgcagaagatgggcctggccttcgagccgcccgatgtgaaccgtggtgtctaccgc
ttcgagccggtgacggacaagctcatccgctacggcctgggcgctatcaagggcacgggc
cagcaggcgatcgaggcgatcgtggccgcgcgcgagggccggggcgaaggcccgaatggc
caggagacgggcccgttcaagagcctgttcgacttttgcctgcgcgtggaccgcacgcgc
atcaacaagcgcacggtggaagcgctcatcaaggccggggcgttcgacgccttgcatctg
aaccgcgccgagttgctggcgacgctggacattgccttcgagtacgcggccaccacgcag
gccaacgccaaccagggcggcctgttcgacatgctgggcggtgacgaccatggctccagc
acgcaggagcccgacctggtggcgaccatgccctggggcgtgaaggaaaaactcacgctc
gagaagagtgccatcggcttctacttctcgggccacctgttcgacgaggtggagcgcgag
gtgcgccgcttcgcgcgcacgcgcctggtggacgtggtggacagccgcgacccggtgatc
ctggcgggcatcgtgaccgacttccgcgtcatcaacggccagcgcggcaagctcgcgctg
ttcaagatcgacgacaagaccggcgtgctggagaccagcgcggacgagaacctgatcaac
gcgcaccgcgcgctgctgaaggacgacgagctgatcgtggtgcaggcggtggcgcagccg
gaccgcttctcgggtggcctgcggctgaagattcagcaggtgtgggacttggccagcgcg
cgctgccgcttcggcaagtacctgcgcgtggcggtcaacgggcacgcgccgtcggtggcg
caactggtgcgcgaattcccgccgaagcgcgagatgagcgatcagggcgagttcgtgcgc
ggcctgccggtgcgcctggcgctgcagcgcgacggggcgcgctgtgaactgcaactggac
gaccgggcgctgtttttccccaccgacgcggcgctggccagctggacggcgcaggcgcac
gagcagcgggcggagatcgtgttcgattga
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