Hymenobacter sp. DG25B: PK28_10915
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Entry
PK28_10915 CDS
T03500
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PK28_10915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyd03019
]
PK28_10915
Enzymes [BR:
hyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PK28_10915
Messenger RNA biogenesis [BR:
hyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PK28_10915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
UTP25
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AIZ64081
UniProt:
A0A0A7LL52
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All DBs
Position
2554353..2555777
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AA seq
474 aa
AA seq
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MSFDELNLIDPILRALQEEGYTTPTPIQQQAIPHVLDGRDLLGVAQTGTGKTAAFTVPIL
QVLHQTAQVERHSQSRIRCLVLTPTRELAIQIGESFAAYGRHLKMRHTVIFGGVGQLPQT
NALNRGVEVLIATPGRLLDLMSQGFVDLRHIEVFVLDEADRMLDMGFINDIKRILPKLPT
SRQTLFFSATMPSQIQQLADSILRPNPVKVAVTPVSSTAETVKQAVYLVEKNDKPALLEH
LLGDKSIRRVLVFTRTKHGADRVVKTLAKASIPAEAIHGNKSQNHRQRALSNFKAGSTRV
LVATDIAARGIDVDELTHVINYEIPNEPETYVHRIGRTGRAGANGIALSFVEDEERAYLQ
DIQLLIRRQIDVVDKHPYTSSAVAPVPLHGGAPIKKPKGPAGRPARPGRGPREERPSRSH
SDSNATSRPSRPSGHSGGNGSGGSGNRAASGGNGGPRRSFRGGNRSGGTGAGTR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgacgaattgaatctgattgaccctattctgcgcgccttgcaagaagaaggg
tatactactcctacccctattcagcagcaagctataccgcacgtgctggatggccgcgac
ctactgggcgtggcgcaaaccggcaccggcaaaaccgccgcctttaccgttcctatcctg
caggtattgcaccagactgctcaggtagagcgtcattcgcagtcccgtattcgttgcctg
gtgctgacgcccacccgggagctggccattcagattggggaaagcttcgccgcctacggc
cggcacctgaaaatgcgccacaccgttattttcggtggtgtaggtcaattgccccaaacc
aatgccctgaaccgcggggtggaagtcctcattgccacccccggtcgtttgcttgacctg
atgagccagggttttgtggatctgcgtcacattgaagtatttgtgctggatgaagccgac
cgcatgctggacatgggctttatcaacgacattaagcgcatcctgcccaagctgcccacc
agccgccaaacgctgtttttctcggctactatgcccagccagattcagcagctggccgac
agcattctgcgccccaaccccgtgaaggtggcggttacgcccgtttccagcacggcagaa
acggtaaagcaggccgtatacctggtggagaaaaatgataagcccgccttgctggagcat
ttgctcggtgataaatccattcgccgggtactggttttcacgcgcaccaagcacggtgcc
gaccgggtggtgaaaactctggccaaagccagcattccggccgaggccattcacggtaac
aagtcgcaaaaccaccggcagcgtgcgctgtccaacttcaaagccggctccacccgcgtg
ctggtggcaaccgacattgcggcccgcggcattgatgtggatgagctaacccacgttatc
aactacgaaattccgaacgagcccgaaacctacgtgcaccgcattggccgcacgggtcgc
gctggcgccaacggcattgcgctttcctttgtggaagatgaggagcgcgcctatctgcag
gatatccagctgctgattcgtcggcagattgacgtggtggataagcacccctacaccagc
agcgcggtagcgcccgtgccgctgcatggcggagcgcccattaaaaagcccaaaggcccg
gctggccgccccgcacgccctggccgtgggccccgggaggaacgcccttcccgctcccat
tctgattccaatgctacttcccgcccttcacggccttccgggcactcaggagggaatggt
agtggtggctccggcaaccgtgctgccagcggtggcaatggcggcccccggcgctccttc
cgcggcggcaaccgctcaggcggtaccggcgcaggcacccgctaa
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