Hydrogenophaga crassostreae: LPB072_18610
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Entry
LPB072_18610 CDS
T04505
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPB072_18610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyl03400
]
LPB072_18610
Enzymes [BR:
hyl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LPB072_18610
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LPB072_18610
DNA repair and recombination proteins [BR:
hyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LPB072_18610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AOW14550
UniProt:
A0A162T384
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All DBs
Position
complement(4028155..4028970)
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRLGFADRIAGALIEEAVLGKPLRWPLGCEVASLAGQRVDRVTRRGKYLLI
HLTSGLLLLHLGMSGSLRFSLALPQRGPHDHFDLVTSLGTLRLHDPRRFGAVVFVNGLDD
PRAVKLLGGLGVEPLEGGFDPLVFHAALRLRRAPIKQILLAGDLVVGVGNIYASEALFMA
RIRPTVRGDRLSKPRAVRLHGAIQSVLRRALALGGSSLRDFSGSDGQSGYFQMDAMVYGR
EGQPCRVCATPIRQIRQGQRSTFFCLNCQKH
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgcctgaagtcgaagtcacccgcctgggatttgctgaccgcatcgccggg
gcgctgatcgaagaggccgtgctgggcaaaccgttgcgctggccgctgggctgtgaggtc
gcgtcgttggccgggcaacgggtcgatcgggtgacccgcaggggcaagtacctgttgatt
catttgacctcgggcttgctgttgctgcacctggggatgtccggcagtctgcggttttcc
ctggccttgccgcagcgtgggccacatgaccactttgacctggtgaccagcctggggacg
ttgcgtttgcacgatcccaggcggttcggcgcggtggtgtttgtcaacggactggacgat
ccccgcgctgtaaagctgctgggcgggcttggcgtggaaccattggaaggcgggttcgac
cccctggtgttccatgccgccttgcgcttgcggcgcgcgccgatcaagcagattttgctg
gcgggagacctcgttgtgggggtgggcaatatttatgcctctgaagccttgtttatggca
cgtattcgccccaccgtgcggggcgacaggctcagcaagccacgggctgttcggctgcat
ggcgcgattcaatctgtgttgcgccgggcgctggccctgggcgggagcagtctgcgggat
ttttcaggttcagacggccagagcggctattttcagatggacgccatggtctatggccgg
gaaggtcagccttgccgggtttgcgccacacccattcgccaaatcagacaaggacagcgt
tcgaccttcttttgcttgaattgccagaaacactga
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