Hydrogenobaculum sp. SN: HydSN_0309
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Entry
HydSN_0309 CDS
T02516
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hys
Hydrogenobaculum sp. SN
Pathway
hys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HydSN_0309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hys03019
]
HydSN_0309
03009 Ribosome biogenesis [BR:
hys03009
]
HydSN_0309
Enzymes [BR:
hys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HydSN_0309
Messenger RNA biogenesis [BR:
hys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HydSN_0309
Ribosome biogenesis [BR:
hys03009
]
Prokaryotic type
rRNA helicases
HydSN_0309
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UTP25
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AGH92933
LinkDB
All DBs
Position
255345..256439
Genome browser
AA seq
364 aa
AA seq
DB search
MSLFSKLSLELQKALEDAGYKEPTPIQRDTIPLALEGYDILGQAATGTGKTGAFAIPIVE
KLQKGKPGVKALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDILQNKNV
DILIGTPGRIKDLIDRKALNLSNVEYLVLDEFDQMLDMGFIEDIEYIISFLPKERTTYMF
SATVPNRIELLAKRFLKSDFKFEKVPSVELKPNIEEKMIKLSSPGEKIHELMHIIDTHPM
EKMLVFVKTKKDAKDLFFLLTKKGIRVQALHGDLTQRQREKALSAFKSGAVSILIATDVA
ARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSKALLRIKKLRS
KISV
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgtcattattctcaaaacttagtttagaactacaaaaagctttggaggatgctggatac
aaagaaccaacacccattcaaagggataccattcctttagcgttggaaggttacgatatc
ttgggacaagctgccaccgggaccgggaagacaggagcttttgctataccaatagtggaa
aagcttcaaaagggaaaaccaggtgttaaagctcttgtgctgacacccactagagagcta
gctatacaggtaaaagagcaaatatacatgcttaccaaatataaaaggctttcttcttac
gtattttatggtgggacttctgtaaaacagaatttggatattttgcaaaataaaaacgtg
gatatcttaataggaactcctggacgtataaaagaccttattgataggaaggctttaaat
ttgtcaaacgtagaatatcttgttttggatgaatttgatcaaatgcttgatatgggcttt
atagaagacatagaatatataataagcttcttaccaaaagaaaggaccacttatatgttt
tctgccactgtgccaaaccgtattgagcttttagcaaaaagatttttaaagagtgatttc
aaatttgagaaagtgccatcggtagagttaaaaccaaacatagaagagaagatgataaag
ttatcttcacctggagaaaaaatacacgagcttatgcatataatagacacccatcctatg
gaaaaaatgcttgtttttgtaaaaactaaaaaagatgcgaaagatttatttttcttgctt
acgaaaaaaggcataagagttcaagctcttcatggagatcttacgcaaagacaaagagaa
aaagctctaagtgcatttaaatctggtgctgttagcatattgatagctaccgatgttgct
gccagaggccttgatataaaagacgtaggagttgtaataaactacaacataccagaagat
ccagagctttacatacataggataggaagaactggtagaataggcaaaagcggtaaagcg
ttttctttaatatgtccagaagattccaaagcgcttttacgcataaaaaagcttaggtca
aaaatatcggtttaa
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