Idiomarina abyssalis: K5X84_10620
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Entry
K5X84_10620 CDS
T07548
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
iab
Idiomarina abyssalis
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iab03019
]
K5X84_10620 (hrpB)
Enzymes [BR:
iab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K5X84_10620 (hrpB)
Messenger RNA biogenesis [BR:
iab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K5X84_10620 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QZN90598
LinkDB
All DBs
Position
complement(2206616..2209087)
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AA seq
823 aa
AA seq
DB search
MTLPIESVLPELAKAFPAARVVIEAPPGAGKSTQLPLFLLQQGVADDGLIVMLQPRRVAA
LNIAHYLAKQLGESVGEQVGYTVRGDSKRSKETQLLIITEGVLVRWLQDDPELSGIGTLI
FDEFHERNLHSDLSLALVIDALPLRPDLNLLIMSATLPAESLKVWLENYCDKVQVLRSEG
RSYPVEYHYRPPSHVTQWLTELPKVVVEAFAVAEKGVLVFLPGVYEIQKVAAELSQRLQP
GTLILPLHGRIPLQQQRQVLKATDEKRIILATNIAETSLTLDGIDVVVDSGRERRAQYLP
QYGLSQLVTQRIAKASATQRAGRAGRQQAGQCFRLWSRSDEHGFAEYAPPDVATQDLSAL
MLDVLRWGSQVKQLAWFSQPEPGHCAAAIDFLTSTGLLEHGQLTSKARQLELGGSDPRVL
LVASAAKQLSEKQQAAMACILATIEEPQSSIKSVDLAERTRAHFQQRNQFALWQQRWRYW
LNYFGLTDSSGSHDKIGDDGLSEALLQGYPDRLAKFDATRGDFQLACGGRVTGDSSRLKQ
PSWAVIFDVTFNEQSNLGRSRCLLPVDDIMPLLKKAGIAPQVSQTSEWFGEKQQLRQITR
EKLGAIVLSEKVSNAPVNDEQRAQAFCLWLRENGLDRLNWSRRSQQLQRRIHWLQQVGGE
LLSYDMTTKGLLSTLEQWAVPYWTSVRSLKQLQQWDPYEALCYFLDYSELQRLNSACPEW
WHTPTERKVFINYLDDTPRVEVKLQEMFGVSESPKIIDNRQVVTVDLLSPAGRLLQRTND
LSSFWQNAYADVRKEMRGRYPKHPWPEDPLNATATFKTKRQQQ
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgccaattgaaagcgtactgccggagctggcaaaagcctttccggcagcacgt
gtcgttattgaggcaccgcccggtgccggtaaatccacacaacttccgctatttctgttg
cagcagggtgttgccgatgacggtcttattgtcatgctgcagccccggcgtgttgctgcg
ctgaatattgctcattatttggctaagcagttgggcgagtcggtgggggagcaggtcggt
tatacggtgcgcggcgacagcaagcgcagtaaggaaactcagttacttattattacggaa
ggcgtgttggtgcggtggttacaggatgaccctgaacttagcggcattggcactctgatt
ttcgatgaatttcacgaacgcaatttgcacagtgacttgagcctggcgctggttattgat
gccctgccactgcgtccagacttaaacctgctgattatgtcagccaccttaccggcagaa
agtcttaaggtctggttagaaaactactgcgataaagttcaggttctgcgcagcgaaggc
cgcagttatccggttgaataccattaccgtcctccgtctcatgtcacccagtggctgact
gaattgcccaaagtggttgttgaggcctttgctgtcgccgaaaaaggcgttttggtgttc
ttgcccggtgtctatgaaatacaaaaagtggcagctgaattgagccaacgactccagccg
ggaacactcattctacccctccatggtcgtatcccactgcagcaacagcggcaggtatta
aaggcgacggacgagaagcgcattattctggcaaccaatattgctgaaaccagcttaacg
ctggatggtattgatgtggttgttgacagtggccgcgagcgtcgggctcaatatctgcct
cagtacggtttaagtcagttggtgactcaacgtattgccaaagcatcggcgacacaacgt
gctggccgtgcggggcgtcagcaggcagggcaatgttttcgtttgtggtcgcgctccgat
gagcatggttttgctgagtacgccccgccggatgtcgcgacacaggatttatcggcctta
atgctggacgttctgcgctggggctctcaggtgaagcagctggcttggttttctcagcct
gaaccgggacattgcgctgcagctatcgactttttaaccagtactggcctattggagcat
gggcagttaacgagcaaagcccggcaactggaactcggcggctcagatcccagagtctta
cttgtggctagtgccgcgaaacagttgtctgaaaaacagcaggcggctatggcttgtatt
ctggcaaccattgaagagccacaaagcagtattaaatcggttgatttggcggagcgaacc
cgggcgcatttccagcagcgtaatcagtttgctttgtggcagcagcgctggcgctattgg
cttaattactttgggctcacggattcgtccgggagtcatgacaagattggtgatgacggg
cttagcgaagcattactgcagggttatcccgatcggttggcaaagtttgatgccacccga
ggtgactttcaactagcctgtggcggacgggtcactggcgacagtagccgccttaaacaa
ccgtcctgggccgttatttttgacgtgaccttcaatgagcaaagtaacttggggcgcagt
cgctgcctgttaccggttgatgacatcatgccacttttaaaaaaggcagggattgcaccg
caagttagccagacaagcgagtggttcggtgaaaagcaacagctgcggcagataactcgt
gaaaagttaggcgctatagtgctgagcgagaaagtcagtaatgcccctgtaaatgacgag
caaagggctcaagctttctgtttgtggctgcgagagaatggcctggacaggctgaactgg
agcaggcggtcacagcagctacagcgacgaatacactggctacaacaagttggtggagaa
ctgctctcttatgatatgaccacaaaaggcttactgagcaccctggagcaatgggctgta
ccttactggacgagcgttcggtctttgaaacagctgcaacagtgggacccttatgaggct
ttatgctattttctcgactactcagaactgcaacgtctgaattcggcttgtcctgaatgg
tggcacactccgacagaacgtaaagtgtttataaattatctggacgacaccccccgggtt
gaggtcaaattgcaggaaatgtttggtgtttctgagtcacccaaaattatcgataatcga
caagttgtaaccgttgatcttctttcgccggctggccggttgttgcagcgcacgaatgac
ctttccagcttttggcagaacgcttacgccgatgtgcgtaaagagatgcgtggccgctat
cctaagcacccgtggcctgaagacccattgaatgcaaccgcaacgtttaaaaccaaaagg
cagcagcagtga
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