Ignavibacterium album: IALB_0585
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Entry
IALB_0585 CDS
T01943
Name
(GenBank) Exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ial
Ignavibacterium album
Pathway
ial03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ial00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IALB_0585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ial03019
]
IALB_0585
03016 Transfer RNA biogenesis [BR:
ial03016
]
IALB_0585
Enzymes [BR:
ial01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IALB_0585
Messenger RNA biogenesis [BR:
ial03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IALB_0585
Transfer RNA biogenesis [BR:
ial03016
]
Prokaryotic type
tRNA degradation factors
IALB_0585
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Rep3_N
IES5
DUF1918
RPAP1_C
Motif
Other DBs
NCBI-ProteinID:
AFH48297
UniProt:
I0AH40
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All DBs
Position
650978..653074
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AA seq
698 aa
AA seq
DB search
MKKELKAFFRKNPGRSFKAKEIARHLNANSDHQYEALKSALNKLYDEKFLTRTGKRFKLN
QIPSTNKITGTLELTEGGYGFVIPDNRKLSDIFIAARNLGTAFDGDKVEVILFAKQKGRN
LEGQIVNVLSRKRKEYVGILKKEKSLYYITPDEPSIHRDIYIDPQKLYSAKVGDKVVVGN
LLWESPTQNPIGEIIEVLGKPGSLDTEITSIAKEFGLKYRFPANVVNESEEIVFEITTND
LKQRIDFRQKNVITIDPEDAKDFDDALSIEKNEKGNFIVGIHIADVSHYVDYDSYLDQEA
QQRGNSVYLVGRVIPMLPENLSNNICSLVPNEDRLTYSVIVEMTPRGRIVDYQIKKTVIN
SKRRFNYDEVQKIIETGEGDFAEDILNLDTLAKILRRKRMKEGSFDFNTLEVKFKLDEYG
IPLEAYIKSMKDSNMLVEEFMLLANKIVAQHIALPKRGEAKPFVYRVHDLPDQEKIMEFV
RFVKSLGYQVSQNLIKKTSEFQKLLDQVKGKEEEPLINELAIRSMAKAFYSPTNIGHYGL
GFKYYTHFTSPIRRYSDLLVHRLLFKYIENPQLPGYTLEELEEICEHISACERTAMEAER
YSVKLKQVELLSNRVGDEFHAIISGVVHFGIFVKITDILAEGLIRLRNLDDDFYIYDEKK
YAIIGKRTKKMYRLGDKVIVKLVRVNEERLELDFLIVE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaattaaaagcattcttcagaaaaaatcccggcagatctttcaaagcaaaa
gaaattgccagacacttaaatgcaaactctgatcatcagtatgaagcattaaaaagcgca
ttgaataaactttatgatgaaaaatttctcacacgaaccggcaagagattcaagcttaat
caaataccttcaacaaataaaataactggcacactcgagttgactgaaggtggttatgga
ttcgtgattccggataaccgcaaactaagcgacatttttatcgctgccaggaatcttgga
accgcattcgatggtgataaagttgaagttatactttttgcaaaacagaaaggaagaaat
cttgaaggtcagattgttaatgttctttcaagaaagcgtaaagaatatgttggaattctt
aaaaaagaaaaatcactttattacatcactcctgacgaaccttcaatccatcgtgatatt
tatatagacccacaaaaactttactcagcaaaagtaggtgataaagttgttgtcggaaat
cttctgtgggaatctccaacacagaatccaatcggagaaattattgaagtacttggaaaa
ccaggttcgcttgatacggaaataacttcaattgcaaaagagttcgggttgaaataccgg
tttccggcaaatgtagtaaatgaatctgaagaaattgtctttgaaattactacgaatgac
ttgaaacaaagaattgacttccgacagaagaatgtaataacaattgatcccgaagatgca
aaagattttgatgatgcattatcaattgagaaaaatgaaaaaggaaatttcattgttgga
attcacattgcagatgtttcccactatgttgattatgattcatatcttgatcaggaagct
cagcaaagaggaaacagtgtttatctcgttggcagggttataccaatgcttcctgaaaat
ctttccaacaacatttgttcacttgttcccaatgaagaccgtcttacttattctgtaatt
gttgaaatgactccgagaggaagaattgttgattatcagataaaaaagaccgtcatcaat
tctaaaagaagatttaattatgatgaagttcagaaaataattgagacaggtgaaggagat
ttcgctgaagatatactgaaccttgatacgcttgctaaaatattaagacgcaagcgaatg
aaagaaggaagttttgattttaatactctcgaagtaaaatttaaacttgatgaatatggc
ataccacttgaagcttacattaagtccatgaaagacagtaatatgcttgttgaagagttt
atgcttcttgccaacaaaattgttgcacaacatattgctttacccaaaagaggagaagca
aaaccatttgtttatcgtgttcacgatttgcctgatcaggaaaagattatggagttcgta
agatttgttaaatcacttggttatcaggttagtcagaacttaattaaaaaaaccagtgag
tttcagaagttacttgatcaggtgaaagggaaagaagaagagccactaatcaatgaactt
gcaattcgttcaatggcaaaagcattttattcaccgacaaatatcggacattatggatta
ggatttaaatattacacgcactttacttcaccaatcagaagatatagtgatttgcttgtt
cacagacttttgttcaaatatattgaaaatccacaactgcctggctatactcttgaagaa
cttgaagaaatttgtgaacatatctctgcttgtgaaagaacagcaatggaagccgaaaga
tattcggttaaacttaagcaggttgaattattgtcaaatcgtgtgggagatgaatttcac
gctatcatttctggtgtagttcattttggaatctttgtgaaaatcactgatattcttgca
gaaggacttatcagattgagaaatttagatgatgatttttacatttatgatgaaaagaaa
tatgctataatcggaaagagaactaaaaaaatgtatagacttggagataaagtaattgtt
aaacttgtaagagtaaatgaagaaagacttgaattggactttctcattgttgaataa
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