Isoptericola dokdonensis: I598_1934
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Entry
I598_1934 CDS
T04384
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ido
Isoptericola dokdonensis
Brite
KEGG Orthology (KO) [BR:
ido00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ido03032
]
I598_1934 (topA)
03400 DNA repair and recombination proteins [BR:
ido03400
]
I598_1934 (topA)
Enzymes [BR:
ido01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I598_1934 (topA)
DNA replication proteins [BR:
ido03032
]
Prokaryotic type
DNA Topoisomerases
I598_1934 (topA)
DNA repair and recombination proteins [BR:
ido03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I598_1934 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Rep_1B
DUF5132
Motif
Other DBs
NCBI-ProteinID:
ANC31481
UniProt:
A0A168FDX4
LinkDB
All DBs
Position
complement(2050932..2053703)
Genome browser
AA seq
923 aa
AA seq
DB search
MPQARKLVIVESPTKARKIQGYLGDDYVVEASVGHIRDLPQPSDLPAEMKKGAFGKFAVD
VDNGFEPYYEVYADKKAKVRELKSLLKDADELFLATDEDREGEAIAWHLIEALKPKVPVR
RMVFHEITREAIGRALESTRELDTDLVDAQETRRILDRLYGYEVSPVLWRKVRQGLSAGR
VQSVATRLVVERERERMAFVAADYWDVTGAFAPTDGDDAGQLFDARLTGLGGERVASGRD
FDDLGRLKVRTGVVHLDEAAATAVVAGLDGADFSVRSLETKPYSRKPAAPFTTSTLQQEA
SRKLRMASRQTMRTAQALYENGYITYMRTDSPALSAEATDAARRQAAELYGPEYVPGAPR
LYASKNKGAQEAHEAIRPAGDSFRTPAQVAREISGDQFKLYELIWKRTVASQMADAKGST
ASVRLAAPLGAGAGERAGSDAVFSASGTVITFRGFLAAYEESRDVEAAEGDAATTSSGPK
ESRLPRMAEGDALAGTDLTADGHSTSPPARYTEASLVKALEELGIGRPSTYAATISTIQD
RGYVRTKGQAMVPTWLAFAVTKLLEDHFGWLVDYDFTAEMEADLDEIAAGDRERVAWLTR
FYFGDGSGETSGWGLRDLVTDLGEIDPVAVNSVEIGEGLRVRVGRYGPYLEDLAAEPDAE
GKAPRASVPEDIAPDELTVATARELLAAGADDGRVLGTDPESGNEIVAKNGRYGPYVTEV
LDLPPIDTSLSAAAQKRAKAAQPKPRTGSLFKSMSLESVTLDDALKLLSLPRVVGTDPES
GAEITAQNGRYGPYLKKGTDSRTIASEEQLLTITLDEALKIYAEPKRRGARAATPPLREL
GDDPTSGKPITVKDGRFGAYVTDGETNRTLPRDLTPESITAERAIELLAEKRAQGPKKRT
ARASTAKKAPAKKAPAKKTTTKK
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgccccaggcccgcaagctcgtgatcgtcgagtcgcccaccaaggctcgcaagatccag
ggctacctcggcgacgactacgtcgtcgaggccagcgtgggccacatccgtgacctcccg
cagccgtcggacctgcccgcggagatgaagaagggcgcgttcggcaagttcgccgtcgac
gtcgacaacgggttcgagccgtactacgaggtgtacgcggacaagaaggcgaaggtccgc
gagctgaagagcctgctcaaggacgccgacgagctcttcctcgccacggacgaggaccgc
gagggcgaggccatcgcgtggcatctcatcgaggcgctcaagcccaaggtgccggtgcgc
cgcatggtgttccacgagatcacccgcgaggcgatcggccgcgcgctggagagcacgcgc
gagctcgacacggacctcgtcgacgcgcaggagacccgccgcatcctcgaccggctctac
ggctacgaggtgtccccggtgctgtggcgcaaggtccgccaggggctgtccgcggggcgc
gtgcagtcggtggcgacgcggctcgtggtggagcgcgagcgtgagcgcatggcgttcgtc
gcggccgactactgggacgtgacgggggcgttcgcgccgaccgacggcgacgacgcgggc
cagctgttcgacgcccggctgacggggctcggcggggagcgcgtcgcctcgggccgcgac
ttcgacgacctgggccggctcaaggtccgcacgggcgtggtgcacctcgacgaggcggcg
gccacggccgtcgtcgccggcctggacggcgcggacttctccgtccggtcgctggagacc
aagccgtactcgcgcaagccggcggcaccgttcacgacgtcgaccctccagcaggaggcg
tcgcgcaagctgcgcatggcgtcgcggcagacgatgcgcacggcgcaggcgctgtacgag
aacggctacatcacgtacatgcggacggactccccggcgctgtcggccgaggcgacggac
gcggcgcggcgccaggcggccgagctgtacggccccgagtacgtgcccggtgcgccgcgg
ctgtacgcctcgaagaacaagggcgcccaggaggcgcacgaggcgatccgccccgcgggg
gactcgttccgcaccccggcgcaggtcgcgcgggagatctccggtgaccagttcaagctg
tacgagctcatctggaagcgcacggtcgcctcgcagatggccgacgcgaagggctcgacg
gcgtccgtgcggctcgcggcgccgctcggcgcgggggcgggggagcgcgcgggctccgac
gccgtcttctcggcctcgggcaccgtcatcacgttccgcgggttcctcgcggcctacgag
gagtcgcgcgacgtggaggcggcggagggcgacgccgcgaccacgtcgtccggcccgaag
gagtcgcgtctgccgcgcatggccgagggcgacgccctggccggcacggacctcacggcc
gacggccactccacgagcccgcccgcccggtacacggaggcgtcgctggtcaaggcgttg
gaggagctcggcatcgggcgtccgtcgacgtacgccgcgacgatctccacgatccaggac
cgcgggtacgtgcggaccaagggccaggccatggtgccgacctggctcgcgttcgccgtg
acgaagctgctcgaggatcacttcggctggctggtcgactacgacttcacggccgagatg
gaggcggacctcgacgagatcgccgccggggaccgggaacgcgtcgcgtggttgacccgc
ttctacttcggcgacggctcgggggagacgtccggctggggcctgcgcgacctggtgacc
gacctcggcgagatcgacccggtcgccgtgaactccgtcgagatcggcgaggggctgcgc
gtgcgggtgggccgctacgggccgtacctggaggacctggccgccgagccggacgccgag
ggcaaggccccgcgcgcgtcggtgccggaggacatcgcgccggacgagctgacggtcgcc
acggcgcgcgagctgctcgccgcgggcgccgacgacggccgcgtgctcggcaccgacccg
gagtcggggaacgagatcgtcgcgaagaacggccgctacggcccgtacgtcaccgaggtg
ctcgacctgccgccgatcgacacgagcctgtcggccgccgcgcagaagcgggcgaaggcc
gcgcagccgaagccccgcacggggtcgctgttcaagtcgatgtcgctggagtcggtgacc
ctcgacgacgcgctgaagctgctgtcgctgccgcgcgtcgtgggcaccgacccggagtcg
ggtgccgagatcaccgcgcagaacggccgctacggcccgtacctgaagaagggcacggac
tcgcggacgatcgcgagcgaggagcagctgctcacgatcacgctcgacgaggcgctgaag
atctacgccgagccgaagcggcgcggggcgcgtgccgcgacgccgccgctgcgcgagctg
ggcgacgacccgacgtcgggcaagccgatcaccgtcaaggacggccgcttcggcgcgtac
gtgacggacggcgagacgaaccggacgctgccgcgcgacctcacgcccgagtcgatcacc
gcggagcgggcgatcgagctgctggcggagaagcgcgcgcaggggccgaagaagcggacg
gcgcgcgcgtcgacggcgaagaaggccccggcgaagaaggcgcccgcgaagaagacgacg
accaagaagtag
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