Ictalurus furcatus (blue catfish): 128605586
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Entry
128605586 CDS
T09387
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128605586 (col13a1)
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128605586 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128605586
NCBI-ProteinID:
XP_053477168
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All DBs
Position
3:17678483..17728312
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AA seq
524 aa
AA seq
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MGIPGRMGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGQKGDMGPPGPK
GLPGEQGPKGEKGVCGDYTHRKRRIVHPCAGGQATQGEPGAQGPPGPPGPPGPPGNPGLT
GANGPPGKPGEPGKPGKDLRMLTGLKGEPGVPGQKGDHGETGLTGPEGPKGSKGDQGQKG
EKGELSSSGVGVKGEPGVPGLPGSKGQKGDQGIKGETGPEGQPGPRGPPGATGEPGKMLI
NNNENDIRNVHLMGPPGLPGPPGLPGTKGEVGLPGLPGLDGEKGPRGKAGEPGPIGPPGP
EGPRGEGGVMGFPGPKGDKGDMGPSGSPGLDGPTGEKGAAGPTGPIGLPGSMGQKGEAGE
KGENGDQMYGPPGPPGPAGPVGPMGSPGLSGPKGEPGLGVRGDKGSPGQKGDKGDRGHLG
LPGAHGLDGKPGPVGLIGPPGIPGPAGPKGERGEKGEMGVAGPTGPQGIPGLVGPPGLKG
NRGERGKRGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgggcattcctggaagaatgggagctccaggggagccaggtctatctatcattggccca
cgaggacctcctggtcagccgggcactagaggatttcctggctttccgggtcccatcggc
ttggatggcaaacctgggcaaaatggtcagaaaggggatatgggcccaccaggtcccaaa
ggacttcctggtgaacaaggtccaaaaggggaaaagggggtgtgtggtgattatacacat
cggaaacggcgtattgtccacccatgtgctggaggacaggccacacagggtgagcctgga
gcacagggaccaccgggccctcctggtcctccagggcctcctggtaatccaggactgact
ggtgctaatgggccaccgggaaaacctggagaacctggaaaaccaggaaaagacctgagg
atgttgacaggattgaagggagaaccaggtgtaccaggacaaaagggtgatcatggtgag
acaggattaactggacctgaaggccccaagggatccaaaggggatcaaggacagaagggt
gaaaagggggagctgagctcatcaggagttggcgtgaaaggagaaccaggagtgccagga
ctgcctggatccaagggtcaaaaaggtgatcaaggcattaagggtgaaacaggacctgag
ggccaacctggaccaagaggtcctccaggtgcaacaggagaaccaggaaaaatgttaatc
aacaacaacgagaatgatattcgtaatgtgcacctaatgggcccacctggtctacctggg
cctcctgggttacctggtaccaagggtgaagttggactgcctggccttcctggtcttgat
ggggaaaagggtcctcggggaaaagcaggagagcctggacccattggcccacctggacct
gaagggccacgaggagagggaggagttatgggcttccctggacctaaaggggataaagga
gacatgggtccctctgggtcacctggtttagatggccctactggtgaaaaaggggctgca
gggcctactggtcctattggattaccaggatcaatgggtcagaaaggtgaagctggagaa
aagggggaaaatggagaccagatgtatggcccaccaggacctccaggacctgcagggcca
gtggggccaatgggatctccaggattgtcagggccaaagggggagccaggtctgggtgtg
agaggagataaaggatcacctggacagaaaggagataaaggagacaggggtcatcttgga
ttaccaggggctcatggtttagacggcaagcctggtccagtgggtcttataggaccacct
ggtatacctggaccagcaggaccaaaaggagagcggggtgagaaaggagaaatgggagta
gcaggaccaacagggcctcaaggtatccctggcttagtaggaccaccaggattaaaagga
aaccggggggagaggggcaagagaggcaacaggggggccaaaggggataagggagaccaa
ggagccccaggattagatgccccttgtccattgggtgatgatggtctacctgtaccagga
tgttggaataaatga
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