Ipomoea nil (Japanese morning glory): 109162440
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Entry
109162440 CDS
T04663
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109162440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109162440
Enzymes [BR:
ini01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109162440
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109162440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109162440
NCBI-ProteinID:
XP_019166688
LinkDB
All DBs
Position
Un
AA seq
625 aa
AA seq
DB search
MLQRRLFCTAISETAFRPNSGGSNYGKWGIKQVTKSNFSEALNDIETRITESDFIAVSLQ
TTGAYSSPWQRLLPFDTAEIAYLKAKRAAERYQILQFAVCPFSLRESKLIASPYNFHLFP
RDELKTGMPSYSFSCQSSYLISIAREGFDFNACINDGISYLSRAQELAAKDCIRSPSAGS
CTVPSPASRSVADSIFINRIKSRVKHWRNACTDQSKKTEDVLISSLRKMISATEVHGSRP
CLNIDICSEQQVQLVLESLKKFVDVVPLLIPANGGGTQIVRVVLTSSQEDKKLLEKELQE
MENKHNKCVRGFREVVDLISCSQKPVVAHNSLNDFTSIHSKFLAPLPSTLDEFRHSLGRV
FPHILDVKHLMKELGSQKNLNNIYVATSYLNSRFFAPVDVELPHQAISTKADSVKSHGHN
VLKISELFAKVCSILKVDPKAPEAIEHCGQLPPALERYANIFDPCSTSYQDPPINEEDVR
VRAKSCKRVSSKNVVFLWGFQSGISTGQVKSLVYGKHEVFSSEFDIRLVDESCAVLVFSS
PGLSEVLLEALDSGSLEEMVSEGIRAASYDAYVKVCKLGLWKANLADSLELALEEESECL
SEAHTAKDLSVIHWNSDEMISLDDL
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgttacagagacgcttattttgcactgctatttccgaaacagctttccggccaaactcc
ggcggtagcaactacggcaaatggggcatcaaacaagttaccaagtccaacttctccgag
gcactgaacgatatcgagacccgcataaccgagtccgatttcatcgccgtgtcgttacag
acgaccggcgcttactcttccccttggcaacggctgctccccttcgacaccgccgaaatc
gcttatctcaaagctaagcgcgctgccgaacggtaccagattcttcaattcgccgtttgc
cctttctctctcagggagtccaaactcattgcttccccatacaattttcatttgttccca
agggatgagctgaaaacagggatgccttcttacagtttttcgtgccaatcatcgtatttg
atctctattgctcgagaaggtttcgactttaatgcttgcataaatgatggcatatcatac
ttatccagagcacaagaactagctgcaaaagactgtattaggagtccatcagctggcagc
tgtacagttccatctccagcatcccgatcagttgctgattctatatttataaacaggatc
aaatcccgagttaaacattggagaaatgcttgcactgatcaaagcaagaaaactgaagat
gttttaataagttccttgaggaaaatgatctcagcaaccgaagtacatggttctaggcct
tgcctgaacatagatatctgcagtgaacagcaagtgcagcttgtgctagagtcactgaag
aagtttgttgatgttgtacctctattaattccagcaaatggaggtgggactcagatagtc
cgggttgttttgacaagttcccaagaagacaagaagctccttgagaaggaacttcaagaa
atggaaaataagcataataagtgtgttcgtggctttcgagaggtggttgatctgatttcc
tgttctcagaaacctgtggttgcccacaactcactaaatgattttacatctattcattcc
aaattcctagctccactaccatcaaccctggatgaatttagacactcattgggtcgtgtc
ttccctcacatacttgatgtgaaacatcttatgaaggaacttggctctcagaagaatttg
aataatatttatgtggctacatcttacctaaatagcaggttctttgccccagtagatgtg
gagcttccccaccaagctatatcaaccaaggcagacagtgtcaagagtcatggccataat
gttttaaagataagcgagttgtttgccaaggtgtgctccattttgaaagttgatccaaaa
gctcctgaagccattgagcactgtggccaattgcctccagctctagaacgctatgcaaat
atttttgatccttgctcaaccagttatcaggatcctcctatcaatgaagaagatgtcaga
gttcgggcaaaaagctgtaaaagagttagcagtaaaaatgtggtcttcctgtgggggttc
cagagtgggatttccactggacaggtgaaaagccttgtatatggtaaacacgaagtcttc
tcgagtgaatttgacattcgattggtggatgagagttgtgcagtacttgttttttcgagt
cctggtttgtctgaagttctcttggaggcattggattctggttctttggaagagatggtc
tctgaaggcattagagctgctagttatgatgcatatgtaaaagtgtgcaagttagggtta
tggaaagcaaacctggctgattctttagaactggctttggaagaagaatctgaatgtctt
tcagaagctcacactgcaaaggatctctcagtgatacattggaatagtgatgaaatgatc
agtctagatgacctgtaa
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