Ipomoea nil (Japanese morning glory): 29082156 Help Entry 29082156          CDS       T04663                                  Symbol rpoC1, IPN_cp075 Name (RefSeq) RNA polymerase beta   KO K03046   DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Organism ini  Ipomoea nil (Japanese morning glory) Pathway ini03020   RNA polymerase Brite KEGG Orthology (KO) [BR:ini00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     29082156 (rpoC1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ini03021]     29082156 (rpoC1)    03400 DNA repair and recombination proteins [BR:ini03400]     29082156 (rpoC1) Enzymes [BR:ini01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      29082156 (rpoC1) Transcription machinery [BR:ini03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      29082156 (rpoC1) DNA repair and recombination proteins [BR:ini03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       29082156 (rpoC1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 Motif Other DBs NCBI-GeneID:  29082156 NCBI-ProteinID:  YP_009295095 UniProt:  U3R792 LinkDB All DBs Position CP AA seq 687 aa AA seqDB search MNPNFSSMIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVKKPYTFLYKTNKPEKD GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFIDSRIRRYQMGYIKLACPV THVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKY SIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLLEWKDLGEEEHTGNEWE DRKVGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDIN ELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKIY KSFSDLIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRG LIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEG RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQ DMLIGLYVLTSENRRGICLNRYTKCNRRNSQTKRSDNSNYKYKKEPVFCNSYDAIGAYRQ KRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGTYYEIYGHYLIVRSLKKEIIFIYIR TTVGHISLYREIEEAIQGFSRAGSSDT NT seq 2064 nt NT seq  +upstreamnt  +downstreamnt atgaatcctaatttttcttctatgatcgatcgatataaacatcaacagctgcgaattgga tcggtttctccccaacaaataagtgcttgggccactaaaatcctgccgaatggagagata gttggagaggtaaaaaaaccatatacttttctttataaaaccaataaaccggaaaaagat ggattattttgtgaaagaatttttgggcctataaaaagtggaatttgcgcttgtggaaat tatcgagtaatcggagatgaaaaagaagaacccaaattttgtgaacaatgcggagtcgaa tttattgattctcggatacgaaggtatcaaatgggctatatcaaactcgcatgcccagta acccatgtgtggtatttaaaacgtcttcctagttatattgcgaatcttttagataaacct cttaaagaattagagggcttagtatactgcgatttttcttttgctaggcccataactaaa aaacccacttttttacgattacggggtttattcgaatatgaaatccaatcttggaaatac agcatcccacttttttttactacccaaggtttcgatacatttcgcaatcgagaaatttct acgggtgcgggtgctatccgagaacaattagccgatctagatttacgaattattatagag aattcgttactagaatggaaagatttgggggaagaagagcacacagggaatgaatgggaa gatcgaaaagttggaagacgaaaggattttttggttagacgtatggagttggctaagcat tttcttcgaacaaatatagaacccgaatggatggttttgtgtctattaccagtccttcct cctgagttgagaccaatcattcagatagatggggggaaactaatgagctcggatattaat gaactctatcgaagagttatctatcggaacaatacccttaccgatctattaacaacaagt agatctacgccaggagaattagtaatgtgtcaagagaaattagtacaagaggctgtggat acacttctggataatggaatccgcggacaaccaatgagggacggtcataataaaatttac aagtcattttcggatttaattgagggcaaagagggaagatttcgcgaaactctgcttggt aaacgagtcgattattcaggacgttctgtgattgtcgtgggcccttcactttcattacat cgatgtggcttgcctcgcgaaatagcaatagagcttttccagacatttgtaattcgcggt ctaattagacaacatcttgcttcgaacataggggttgctaagagtaaaattcgggaaaaa gaaccgattgtatgggaaatacttcaagaagttatgcaggggcatcctgtattgctgaat agagcgcccactctgcatagattaggcatacaggcattccagcccgttttagtggagggg cgtgctatttgtttacatccattagtttgtaaggggttcaatgcagattttgatggagat caaatggctgttcatgtacccttatctttggaggctcaagtggaggcccgtttacttatg ttttctcatatgaatcttttatctccggctattggggatcccatttccgtaccaacccaa gatatgcttattggactctatgtattaacgagcgaaaatcgtcgaggtatttgtctaaat aggtatactaagtgtaatcgtagaaactctcaaactaaaagaagtgacaatagtaattat aagtataagaaagagcccgttttttgtaattcctatgatgcaattggagcttatcgacag aaacgaatcaatttagatagtcctttatggctccggtggagactagatcaacgcgttatt acttcaagagaaactcccatcgaagttcactatgaatccctagggacttattatgagatt tatggacactatctaatagtaagaagtctaaaaaaagaaattatttttatatacattcga accactgttggccacatttctctttatcgagaaatcgaagaagctatacaggggttttct cgggccgggtcatccgatacctaa

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