Ictalurus punctatus (channel catfish): 108259099
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Entry
108259099 CDS
T04658
Name
(RefSeq) probable ATP-dependent RNA helicase DDX28
KO
K20096
ATP-dependent RNA helicase DDX28 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
108259099
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108259099
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Other ribosome biogenesis factors
108259099
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
108259099
NCBI-ProteinID:
XP_017313797
Ensembl:
ENSIPUG00000017350
UniProt:
W5U9K9
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All DBs
Position
27:14094227..14096574
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AA seq
565 aa
AA seq
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MYSVKVGCFGLLASRQLLSQTNSIPSYFRGGVCVQDLFYNVVGRKTSTVTSEPVIIRVPR
RLQDHIDNVKQVKRKHLDKVATVKAGKLLIKSKNPLLNQSVSYTLGKFEEPVLTSKGWKN
SKSFGDYFTINSTQSAPPFLPKTQEENKQDGHGHRRTFAQLRLSSELVETLQSHNITHPT
IVQLQTIPKLLRGHNVLCAAETGSGKTLAYLLPVIHKLQEEMPQMAFGEQKMQAVVLVPS
RELAEQVTSVARTMSRPFGLKVKVVGGGRGVGSIKAAFSYGQPHILVATPGALLKALWRR
FVDLSELRFMVVDEADTMFDPSFVDMLEKILRQTQIAANLSEITGPIRKAQLVVVGATFP
GGVSELLDKVTDLGSLVTVKSRMLHYLMPHVKQTFVKVRGSEKVLELHQALKEAEPDRKG
VLVFCNSAATVNWLGYTLDEMGLRHARLQGEMPASMREGIFQSFQKGHVDVLLCTDIASR
GLDTQRVGLVVNYDFPESHTDYIHRAGRVGRVGATGGEHVLSFITHPWDVALVQSIETAA
RRRMCLPGMETEIQKPIKTLSQENK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcgtgaaggttgggtgctttggcttgctcgcttccaggcagctgttaagccaa
actaattcgattcctagttatttccgtggtggagtttgtgtacaagacttgttttataat
gttgttggacgcaaaacgtcgacggtgacgtcagaaccggtgataattcgcgtcccgagg
cgccttcaagaccacatagacaatgtgaagcaggttaaacgcaaacaccttgataaagtg
gccacagtaaaagctggtaaactgctgatcaaaagcaagaatccattactgaatcagtct
gtcagttacaccctgggcaagtttgaagaaccagtcctcacgtccaagggatggaagaat
agcaaatcatttggggactactttaccatcaacagcacccagagtgctcctccgttcctg
cctaagactcaggaggagaataaacaggatggacatggtcaccgaaggacattcgctcaa
ctccgcctttcatcagagctggtcgagacgctgcagagtcacaatattacccatcctacc
attgtgcagttgcagaccattcccaaactgctccggggtcacaacgtcctgtgtgctgct
gagacggggagcgggaaaaccctggcctacctcctgcccgttatccacaaattgcaagaa
gagatgccgcagatggcgttcggagagcagaagatgcaagcggtggttcttgtgccttcg
agagagctggctgagcaggtgacctccgtcgcaaggactatgagccgaccgtttgggtta
aaggttaaagtcgtcggtggaggaagaggagtcgggagcatcaaggcagcgttcagctat
ggtcagcctcacattctggttgctacgcctggcgcgttgctgaaggcgctgtggagacgt
tttgtggatctaagcgaactgcgttttatggtagtagatgaagctgatacaatgtttgac
cccagctttgtagacatgctcgagaaaatcctgcggcaaacccagatcgctgcaaatctc
tccgagataaccggaccgatccgaaaagcacagctggtagtagtgggcgcgactttcccc
ggaggcgtcagcgagctcctggataaagtgaccgacctgggcagcttggtgacggttaag
agccggatgttgcactacctgatgccacatgttaagcagaccttcgtgaaagtcagaggc
tctgagaaggttctggagcttcaccaagcattgaaggaggcggagcctgatcgtaaaggc
gttttggtgttctgcaattcggctgccaccgtcaactggcttggttacacgctggacgag
atgggcctgcgtcatgcacgtcttcagggagaaatgcctgcctcgatgagggaaggaatc
tttcagagcttccaaaaaggccatgttgatgttttgctttgtaccgatatcgcttcccga
ggactcgatacgcaaagagtggggttggtggttaactatgacttccctgaatcccataca
gactacatccaccgagcaggccgcgtaggcagggtaggagccacaggtggagaacacgtc
ctgagttttatcacccatccttgggacgtggcgctggtgcagagcatcgagacagcagcc
aggaggagaatgtgtttaccaggaatggagacagaaatccagaaaccaatcaaaacgtta
tcacaggagaacaaatga
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