Ictalurus punctatus (channel catfish): 108261058 Help Entry 108261058         CDS       T04658                                  Name (RefSeq) DNA ligase 1 isoform X3   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu03030   DNA replication ipu03410   Base excision repair ipu03420   Nucleotide excision repair ipu03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ipu00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     108261058    03410 Base excision repair     108261058    03420 Nucleotide excision repair     108261058    03430 Mismatch repair     108261058  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ipu03032]     108261058    03400 DNA repair and recombination proteins [BR:ipu03400]     108261058 Enzymes [BR:ipu01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      108261058     6.5.1.6  DNA ligase (ATP or NAD+)      108261058     6.5.1.7  DNA ligase (ATP, ADP or GTP)      108261058 DNA replication proteins [BR:ipu03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     108261058  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      108261058 DNA repair and recombination proteins [BR:ipu03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      108261058    NER (nucleotide excision repair)     Other NER factors      108261058    MMR (mismatch excision repair)     Other MMR factors      108261058 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  108261058 NCBI-ProteinID:  XP_017317369 Ensembl:  ENSIPUG00000018722 UniProt:  A0A2D0QGB3 LinkDB All DBs Position 20:11561889..11608828 Genome browser AA seq 946 aa AA seqDB search MQRSISSFFQPMKCKEKDGMPKEKSESVKSPLKPQNIDQECDSPMKMSKWSRAIIDSDDE EQQMVKEEVSKQNGRQTAILGKEKVGLVKDTVSPLSPKPLVTQTTSAVSVTYGIPETTVT PSSTSPSSIPKRKTARKQFPKRKLDSRSDGEREKEVEGNKTEGGKERKRAKIEESSEKME NGEEAMEVEQKNRNTVEKELLKAKDEGNMNVTNEKYEVNGKNKEMKKVTKEEKCSPERVM KRKKEAEEEKREGSAKKKSINCFFAPRKAAVNLEKSEEKSDVEKKDGANAAADTASEEKE KKGEKDLEPSNQSQYDPSKAHYHPIDDACWKKRQRLRNIETLSNLLRSVILLTPDDLLCC VYLCLNQLGPSYQGLELGIGETVLMKAVAQATGRQLDKIKTEAQEKGDLGLVAESSRSNQ RMMFAPANLTAMGVFSKLKEIGNMSGNSAMSKKIDIIKGLFVACRFSEARYIVRSLAGKL RIGLAEQSVLAALSQAVCLSPPGQDFPPAVIDAGKGMSAESKRAWLEKKGLILKQTYCEM PNYDAIIPVMLKLGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDETAFTCEYKYD GERAQIHILYSGEVRIFSRNQEDNTSKYPDIISRMPQVKKESVRSFVLDSEVVAWDREKK QIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRQSFTEKE GEFVFARSLDSDNTETIAEFLEQSIRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYL EGVGDTVDLCVIGAYLGKGKRAGSYGGFLLGCYDDENEEFQSVCKIGTGFKDEDLEQHYN FLKEHVLPKPRPYYRVDQSAEPDVWLDAAQVWEVKCADLSLSPVYKAAMGLVDPDKGISL RFPRFLRIRDDKKPEDATTGAQIADLYRKQQQIQNQGDKADLEDYY NT seq 2841 nt NT seq  +upstreamnt  +downstreamnt atgcagcgaagtatatcgtccttctttcagccaatgaagtgtaaggagaaggatggcatg cccaaggagaaatctgagtcagttaaaagccccctcaagcctcagaacattgatcaggaa tgtgattcaccaatgaagatgagtaagtggagccgagcaatcatagacagtgatgatgaa gagcagcagatggtaaaagaagaggtttccaaacaaaatggaaggcaaacagccatacta ggcaaagagaaggttggtcttgttaaggatacagtcagtccactctcaccaaagcccctt gttacccagacaacctctgctgtttcagtaacttatggcatccctgaaacaactgttacc ccaagttccacttcaccttccagcatcccaaaacgcaagactgcccgtaagcagtttccc aagaggaaattggacagcaggagtgatggagagagagaaaaggaggtggaaggaaacaag acagagggaggaaaggagcgtaaacgagcaaaaatagaagaatcttctgaaaagatggag aatggtgaagaggctatggaggtggagcaaaagaacagaaatacagtggagaaagaacta ctgaaagcaaaggatgagggaaacatgaatgtgactaatgagaagtatgaagtgaatggg aagaataaagaaatgaaaaaagtaacaaaggaggaaaaatgcagtcctgaaagagttatg aagagaaagaaggaagcagaggaggaaaagagagagggatctgctaagaaaaaatccatc aactgtttctttgcacccagaaaagctgcagtgaaccttgaaaaatcagaagagaaaagt gatgtagagaagaaggatggtgcgaatgctgcagctgatactgcttctgaggagaaagaa aagaagggtgagaaggatctggaaccttcaaaccagagccaatatgatccatctaaagct cactaccatcccattgatgatgcttgctggaagaagaggcagaggttgagaaacattgag actctgtccaaccttctgcggtctgttatcctactcactccagatgacctcttgtgctgt gtgtacctgtgtctgaatcagcttggcccctcctaccaggggctagagctaggcataggg gaaacagtactgatgaaggctgttgcccaggcaactgggcgtcagctggacaaaatcaag actgaggcccaggaaaaaggtgacctgggattagtagccgagagttcccgtagtaaccag agaatgatgtttgcaccagcgaatctgactgcaatgggtgtgttcagcaaactcaaggag attggcaacatgagtggaaactccgcaatgagtaagaaaattgacatcattaagggtctg tttgtggcttgtcgtttctcagaggccagatacattgtacggtcactggcaggcaaactg aggattggattggctgagcagagtgttttagcagctcttagtcaagctgtatgtctgagt ccaccaggccaagatttcccaccagctgtgattgatgcaggaaaggggatgagtgcagag agcaagagagcatggcttgagaaaaaaggactcattcttaagcagacttactgtgaaatg ccgaattacgatgccataatccccgtcatgttgaagttgggcatagatgaactgcctaat cactgcaaacttactccaggtgtgccactgcgccccatgctggcccacccaactaaagga gtaggggaggtgatgaaaagatttgatgaaactgctttcacctgtgaatacaagtatgat ggggagagagcacagattcacattctttatagtggtgaggttcgtatcttcagccgaaac caagaggataacaccagcaagtaccctgacatcatttcacggatgccacaggtaaagaag gaatctgtgcgtagctttgtgttggactcggaggtggttgcatgggacagagagaaaaag cagattcagccgtttcaagttctgaccacacgcaaaaggaaggatgtggatgcatctgag attaaggtgcaggtttgtgtgtatgcctttgacctgctgtacttaaatggagagtctctg gtacgggagccattgagtaagcggcgagctttgttgaggcagagtttcacggagaaggag ggagaatttgtctttgctcgttcgcttgactctgataacactgaaactatagcggagttc ctggagcagtccatacgagactcttgcgaaggcttgatggtgaagaccttggagaaagat gccacttacgaaattgccaaacgctctcataactggcttaagcttaagaaggattatctg gaaggtgtcggggacacagtggatctgtgtgtgattggtgcatatctagggaagggcaag agagccggtagctatgggggtttcctgcttggctgctatgatgatgagaatgaggagttt cagtctgtctgtaagataggtacaggtttcaaagatgaagatctggagcagcattacaat ttcttaaaggagcacgtccttcctaagcctcgcccctactacagagtggaccagtcagca gagccagatgtttggctggatgctgcgcaagtgtgggaagtgaaatgtgctgatttgtca ttgtctccggtttacaaggcagcaatgggattggtggacccagataaagggatttccctt cgctttcctcgattccttcgcatcagagatgacaagaaaccagaggatgctactacagga gcgcagatagctgatctctacagaaagcagcagcagattcagaatcaaggagataaggct gatctagaggattactactga

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